Experiment: BG11 with Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpC and petF are separated by 108 nucleotides petF and Synpcc7942_0339 are separated by 160 nucleotides
Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408
atpC
Synpcc7942_0338: petF - Ferredoxin (2Fe-2S), at 333,517 to 333,834
petF
Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074
_0339
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 333.461 kb on - strand at 333.469 kb on - strand at 333.555 kb on + strand, within petF at 333.564 kb on + strand, within petF at 333.564 kb on - strand, within petF at 333.597 kb on - strand, within petF at 333.601 kb on + strand, within petF at 333.640 kb on + strand, within petF at 333.645 kb on + strand, within petF at 333.656 kb on - strand, within petF at 333.662 kb on - strand, within petF at 333.708 kb on + strand, within petF at 333.713 kb on + strand, within petF at 333.727 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.740 kb on + strand, within petF at 333.740 kb on - strand, within petF at 333.741 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.756 kb on - strand, within petF at 333.757 kb on - strand, within petF at 333.801 kb on + strand, within petF at 333.810 kb on - strand at 333.829 kb on + strand at 333.843 kb on + strand at 333.857 kb on + strand at 333.866 kb on - strand at 333.917 kb on - strand at 333.961 kb on + strand at 333.991 kb on + strand at 333.991 kb on + strand at 333.999 kb on - strand at 333.999 kb on - strand at 334.003 kb on - strand at 334.007 kb on + strand at 334.007 kb on + strand at 334.015 kb on - strand at 334.105 kb on - strand, within Synpcc7942_0339 at 334.153 kb on + strand, within Synpcc7942_0339 at 334.375 kb on + strand, within Synpcc7942_0339 at 334.429 kb on + strand, within Synpcc7942_0339 at 334.468 kb on + strand, within Synpcc7942_0339 at 334.547 kb on + strand, within Synpcc7942_0339 at 334.758 kb on + strand, within Synpcc7942_0339 at 334.765 kb on + strand, within Synpcc7942_0339 at 334.790 kb on + strand, within Synpcc7942_0339 at 334.821 kb on - strand, within Synpcc7942_0339
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.5 mg/ml remove 333,461 - -0.7 333,469 - -0.8 333,555 + petF Synpcc7942_0338 0.12 -0.3 333,564 + petF Synpcc7942_0338 0.15 +4.3 333,564 - petF Synpcc7942_0338 0.15 +0.3 333,597 - petF Synpcc7942_0338 0.25 +0.3 333,601 + petF Synpcc7942_0338 0.26 -0.5 333,640 + petF Synpcc7942_0338 0.39 -1.0 333,645 + petF Synpcc7942_0338 0.40 -0.2 333,656 - petF Synpcc7942_0338 0.44 -1.8 333,662 - petF Synpcc7942_0338 0.46 -1.7 333,708 + petF Synpcc7942_0338 0.60 -2.1 333,713 + petF Synpcc7942_0338 0.62 -0.7 333,727 + petF Synpcc7942_0338 0.66 -0.5 333,739 + petF Synpcc7942_0338 0.70 -1.0 333,739 + petF Synpcc7942_0338 0.70 -2.1 333,739 + petF Synpcc7942_0338 0.70 -1.7 333,739 + petF Synpcc7942_0338 0.70 +0.3 333,739 + petF Synpcc7942_0338 0.70 -2.0 333,740 + petF Synpcc7942_0338 0.70 -2.5 333,740 - petF Synpcc7942_0338 0.70 -1.2 333,741 - petF Synpcc7942_0338 0.70 -2.9 333,747 - petF Synpcc7942_0338 0.72 +2.0 333,747 - petF Synpcc7942_0338 0.72 -1.7 333,747 - petF Synpcc7942_0338 0.72 -0.4 333,747 - petF Synpcc7942_0338 0.72 -0.7 333,747 - petF Synpcc7942_0338 0.72 -0.5 333,747 - petF Synpcc7942_0338 0.72 -2.2 333,756 - petF Synpcc7942_0338 0.75 -0.1 333,757 - petF Synpcc7942_0338 0.75 -0.9 333,801 + petF Synpcc7942_0338 0.89 -0.7 333,810 - -0.4 333,829 + -0.7 333,843 + +4.4 333,857 + +2.8 333,866 - +4.3 333,917 - +1.8 333,961 + +5.8 333,991 + -1.9 333,991 + +0.1 333,999 - -0.3 333,999 - +0.8 334,003 - +0.2 334,007 + +1.4 334,007 + +3.3 334,015 - -0.3 334,105 - Synpcc7942_0339 0.10 +3.6 334,153 + Synpcc7942_0339 0.15 +4.3 334,375 + Synpcc7942_0339 0.35 +4.8 334,429 + Synpcc7942_0339 0.40 +4.7 334,468 + Synpcc7942_0339 0.44 +6.2 334,547 + Synpcc7942_0339 0.51 -0.3 334,758 + Synpcc7942_0339 0.71 +3.8 334,765 + Synpcc7942_0339 0.71 +0.3 334,790 + Synpcc7942_0339 0.74 +4.7 334,821 - Synpcc7942_0339 0.76 +4.0
Or see this region's nucleotide sequence