Experiment: BG11 with Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotides Synpcc7942_0064 and infC are separated by 116 nucleotides infC and Synpcc7942_0066 are separated by 116 nucleotides Synpcc7942_0066 and Synpcc7942_0067 are separated by 4 nucleotides Synpcc7942_0067 and Synpcc7942_0068 are separated by 4 nucleotides
Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706
_0063
Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870
_0064
Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541
infC
Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172
_0066
Synpcc7942_0067: Synpcc7942_0067 - probable permease protein of ABC transporter, at 67,177 to 67,986
_0067
Synpcc7942_0068: Synpcc7942_0068 - ATPase, at 67,991 to 68,980
_0068
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.710 kb on + strand at 64.722 kb on - strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.734 kb on + strand, within Synpcc7942_0064 at 64.734 kb on - strand, within Synpcc7942_0064 at 64.783 kb on - strand, within Synpcc7942_0064 at 65.691 kb on + strand at 65.700 kb on + strand at 65.708 kb on - strand at 65.731 kb on - strand at 65.761 kb on + strand at 65.847 kb on + strand, within Synpcc7942_0066 at 65.863 kb on + strand, within Synpcc7942_0066 at 65.871 kb on - strand, within Synpcc7942_0066 at 65.871 kb on - strand, within Synpcc7942_0066 at 65.871 kb on - strand at 65.871 kb on - strand, within Synpcc7942_0066 at 65.871 kb on - strand, within Synpcc7942_0066 at 65.952 kb on - strand, within Synpcc7942_0066 at 65.969 kb on + strand, within Synpcc7942_0066 at 65.969 kb on + strand, within Synpcc7942_0066 at 65.970 kb on + strand, within Synpcc7942_0066 at 65.977 kb on - strand, within Synpcc7942_0066 at 65.999 kb on + strand, within Synpcc7942_0066 at 66.007 kb on - strand, within Synpcc7942_0066 at 66.018 kb on + strand, within Synpcc7942_0066 at 66.023 kb on + strand, within Synpcc7942_0066 at 66.040 kb on - strand, within Synpcc7942_0066 at 66.075 kb on + strand, within Synpcc7942_0066 at 66.149 kb on - strand, within Synpcc7942_0066 at 66.168 kb on + strand, within Synpcc7942_0066 at 66.174 kb on + strand, within Synpcc7942_0066 at 66.182 kb on - strand, within Synpcc7942_0066 at 66.182 kb on - strand, within Synpcc7942_0066 at 66.209 kb on + strand, within Synpcc7942_0066 at 66.224 kb on + strand, within Synpcc7942_0066 at 66.225 kb on - strand, within Synpcc7942_0066 at 66.253 kb on + strand, within Synpcc7942_0066 at 66.258 kb on + strand, within Synpcc7942_0066 at 66.260 kb on - strand, within Synpcc7942_0066 at 66.261 kb on - strand, within Synpcc7942_0066 at 66.266 kb on - strand, within Synpcc7942_0066 at 66.272 kb on + strand, within Synpcc7942_0066 at 66.280 kb on - strand, within Synpcc7942_0066 at 66.280 kb on - strand, within Synpcc7942_0066 at 66.280 kb on - strand, within Synpcc7942_0066 at 66.308 kb on + strand, within Synpcc7942_0066 at 66.308 kb on - strand, within Synpcc7942_0066 at 66.316 kb on - strand, within Synpcc7942_0066 at 66.339 kb on + strand, within Synpcc7942_0066 at 66.378 kb on - strand, within Synpcc7942_0066 at 66.382 kb on - strand, within Synpcc7942_0066 at 66.387 kb on - strand, within Synpcc7942_0066 at 66.393 kb on + strand, within Synpcc7942_0066 at 66.405 kb on + strand, within Synpcc7942_0066 at 66.425 kb on + strand, within Synpcc7942_0066 at 66.433 kb on - strand at 66.435 kb on + strand, within Synpcc7942_0066 at 66.458 kb on + strand, within Synpcc7942_0066 at 66.466 kb on + strand, within Synpcc7942_0066 at 66.466 kb on + strand, within Synpcc7942_0066 at 66.466 kb on + strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.474 kb on - strand, within Synpcc7942_0066 at 66.541 kb on + strand, within Synpcc7942_0066 at 66.541 kb on + strand, within Synpcc7942_0066 at 66.541 kb on + strand, within Synpcc7942_0066 at 66.541 kb on + strand, within Synpcc7942_0066 at 66.541 kb on + strand, within Synpcc7942_0066 at 66.548 kb on - strand, within Synpcc7942_0066 at 66.549 kb on - strand, within Synpcc7942_0066 at 66.549 kb on - strand, within Synpcc7942_0066 at 66.549 kb on - strand, within Synpcc7942_0066 at 66.549 kb on - strand, within Synpcc7942_0066 at 66.549 kb on - strand, within Synpcc7942_0066 at 66.562 kb on - strand, within Synpcc7942_0066 at 66.573 kb on - strand, within Synpcc7942_0066 at 66.573 kb on - strand, within Synpcc7942_0066 at 66.596 kb on - strand, within Synpcc7942_0066 at 66.596 kb on - strand, within Synpcc7942_0066 at 66.606 kb on - strand, within Synpcc7942_0066 at 66.606 kb on - strand, within Synpcc7942_0066 at 66.606 kb on - strand, within Synpcc7942_0066 at 66.617 kb on + strand, within Synpcc7942_0066 at 66.627 kb on - strand, within Synpcc7942_0066 at 66.628 kb on + strand, within Synpcc7942_0066 at 66.649 kb on + strand, within Synpcc7942_0066 at 66.671 kb on - strand, within Synpcc7942_0066 at 66.766 kb on - strand, within Synpcc7942_0066 at 66.797 kb on + strand, within Synpcc7942_0066 at 66.797 kb on + strand, within Synpcc7942_0066 at 66.805 kb on - strand, within Synpcc7942_0066 at 66.805 kb on - strand, within Synpcc7942_0066 at 66.810 kb on + strand, within Synpcc7942_0066 at 66.868 kb on + strand, within Synpcc7942_0066 at 66.868 kb on + strand, within Synpcc7942_0066 at 66.885 kb on + strand, within Synpcc7942_0066 at 66.919 kb on + strand, within Synpcc7942_0066 at 66.939 kb on - strand, within Synpcc7942_0066 at 66.955 kb on + strand, within Synpcc7942_0066 at 67.034 kb on - strand at 67.034 kb on - strand at 67.071 kb on + strand at 67.079 kb on - strand at 67.081 kb on + strand at 67.099 kb on - strand at 67.112 kb on + strand at 67.112 kb on + strand at 67.133 kb on - strand at 67.133 kb on - strand at 67.133 kb on - strand at 67.136 kb on + strand at 67.174 kb on + strand at 67.180 kb on + strand at 67.182 kb on - strand at 67.217 kb on + strand at 67.217 kb on + strand at 67.217 kb on + strand at 67.217 kb on + strand at 67.222 kb on + strand at 67.227 kb on + strand at 67.227 kb on + strand at 67.246 kb on + strand at 67.264 kb on + strand, within Synpcc7942_0067 at 67.293 kb on + strand, within Synpcc7942_0067 at 67.325 kb on - strand, within Synpcc7942_0067 at 67.338 kb on - strand, within Synpcc7942_0067 at 67.356 kb on + strand, within Synpcc7942_0067 at 67.363 kb on + strand, within Synpcc7942_0067 at 67.365 kb on - strand, within Synpcc7942_0067 at 67.366 kb on + strand, within Synpcc7942_0067 at 67.366 kb on + strand, within Synpcc7942_0067 at 67.374 kb on - strand, within Synpcc7942_0067 at 67.374 kb on - strand at 67.374 kb on - strand, within Synpcc7942_0067 at 67.374 kb on - strand, within Synpcc7942_0067 at 67.381 kb on - strand, within Synpcc7942_0067 at 67.389 kb on + strand, within Synpcc7942_0067 at 67.399 kb on + strand, within Synpcc7942_0067 at 67.399 kb on + strand, within Synpcc7942_0067 at 67.433 kb on + strand, within Synpcc7942_0067 at 67.443 kb on + strand, within Synpcc7942_0067 at 67.451 kb on + strand, within Synpcc7942_0067 at 67.451 kb on + strand, within Synpcc7942_0067 at 67.456 kb on + strand, within Synpcc7942_0067 at 67.459 kb on - strand, within Synpcc7942_0067 at 67.459 kb on - strand, within Synpcc7942_0067 at 67.464 kb on - strand, within Synpcc7942_0067 at 67.464 kb on - strand, within Synpcc7942_0067 at 67.479 kb on + strand at 67.479 kb on + strand, within Synpcc7942_0067 at 67.487 kb on - strand, within Synpcc7942_0067 at 67.493 kb on - strand, within Synpcc7942_0067 at 67.536 kb on + strand, within Synpcc7942_0067 at 67.568 kb on + strand, within Synpcc7942_0067 at 67.591 kb on + strand, within Synpcc7942_0067 at 67.601 kb on + strand, within Synpcc7942_0067 at 67.621 kb on - strand, within Synpcc7942_0067 at 67.625 kb on + strand, within Synpcc7942_0067 at 67.625 kb on + strand, within Synpcc7942_0067 at 67.625 kb on + strand, within Synpcc7942_0067 at 67.633 kb on - strand, within Synpcc7942_0067 at 67.664 kb on - strand, within Synpcc7942_0067 at 67.664 kb on - strand, within Synpcc7942_0067 at 67.680 kb on + strand, within Synpcc7942_0067 at 67.685 kb on + strand, within Synpcc7942_0067 at 67.685 kb on + strand, within Synpcc7942_0067 at 67.688 kb on - strand, within Synpcc7942_0067 at 67.688 kb on - strand, within Synpcc7942_0067 at 67.688 kb on - strand, within Synpcc7942_0067 at 67.693 kb on - strand, within Synpcc7942_0067 at 67.694 kb on + strand, within Synpcc7942_0067 at 67.698 kb on - strand, within Synpcc7942_0067 at 67.732 kb on + strand, within Synpcc7942_0067 at 67.732 kb on + strand, within Synpcc7942_0067 at 67.742 kb on + strand, within Synpcc7942_0067 at 67.750 kb on + strand, within Synpcc7942_0067 at 67.750 kb on - strand, within Synpcc7942_0067 at 67.750 kb on - strand, within Synpcc7942_0067 at 67.750 kb on - strand, within Synpcc7942_0067 at 67.758 kb on - strand, within Synpcc7942_0067 at 67.791 kb on + strand, within Synpcc7942_0067 at 67.793 kb on - strand, within Synpcc7942_0067 at 67.929 kb on + strand at 67.934 kb on + strand at 67.942 kb on - strand at 67.950 kb on - strand at 67.952 kb on - strand at 67.968 kb on + strand at 67.976 kb on - strand at 67.988 kb on + strand at 67.988 kb on + strand at 67.996 kb on - strand at 67.996 kb on - strand at 68.018 kb on - strand at 68.067 kb on - strand at 68.080 kb on + strand at 68.080 kb on + strand at 68.082 kb on + strand at 68.082 kb on + strand at 68.090 kb on - strand, within Synpcc7942_0068 at 68.090 kb on - strand, within Synpcc7942_0068 at 68.090 kb on - strand, within Synpcc7942_0068 at 68.090 kb on - strand, within Synpcc7942_0068 at 68.090 kb on - strand, within Synpcc7942_0068 at 68.105 kb on - strand, within Synpcc7942_0068 at 68.166 kb on - strand, within Synpcc7942_0068 at 68.167 kb on - strand, within Synpcc7942_0068
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.5 mg/ml remove 64,710 + +1.3 64,722 - Synpcc7942_0064 0.11 -0.1 64,724 + Synpcc7942_0064 0.12 -0.4 64,724 + Synpcc7942_0064 0.12 -0.3 64,724 + Synpcc7942_0064 0.12 -2.2 64,724 + Synpcc7942_0064 0.12 -0.3 64,724 + Synpcc7942_0064 0.12 +0.5 64,732 - Synpcc7942_0064 0.17 -0.7 64,732 - Synpcc7942_0064 0.17 -0.2 64,734 + Synpcc7942_0064 0.18 -0.9 64,734 - Synpcc7942_0064 0.18 -0.4 64,783 - Synpcc7942_0064 0.48 +0.7 65,691 + -0.2 65,700 + -0.9 65,708 - -0.5 65,731 - -0.6 65,761 + -0.5 65,847 + Synpcc7942_0066 0.12 +1.0 65,863 + Synpcc7942_0066 0.14 +0.3 65,871 - Synpcc7942_0066 0.14 -0.5 65,871 - Synpcc7942_0066 0.14 +0.7 65,871 - +1.3 65,871 - Synpcc7942_0066 0.14 +0.9 65,871 - Synpcc7942_0066 0.14 -0.2 65,952 - Synpcc7942_0066 0.19 -3.2 65,969 + Synpcc7942_0066 0.21 +0.4 65,969 + Synpcc7942_0066 0.21 -1.8 65,970 + Synpcc7942_0066 0.21 -1.2 65,977 - Synpcc7942_0066 0.21 -1.1 65,999 + Synpcc7942_0066 0.23 -1.2 66,007 - Synpcc7942_0066 0.23 -1.0 66,018 + Synpcc7942_0066 0.24 -0.9 66,023 + Synpcc7942_0066 0.24 +0.5 66,040 - Synpcc7942_0066 0.25 -0.7 66,075 + Synpcc7942_0066 0.28 -1.5 66,149 - Synpcc7942_0066 0.32 +0.1 66,168 + Synpcc7942_0066 0.34 -1.0 66,174 + Synpcc7942_0066 0.34 -1.3 66,182 - Synpcc7942_0066 0.35 -0.5 66,182 - Synpcc7942_0066 0.35 +1.1 66,209 + Synpcc7942_0066 0.36 +0.5 66,224 + Synpcc7942_0066 0.37 -0.4 66,225 - Synpcc7942_0066 0.37 -0.0 66,253 + Synpcc7942_0066 0.39 +1.0 66,258 + Synpcc7942_0066 0.40 -0.4 66,260 - Synpcc7942_0066 0.40 -0.0 66,261 - Synpcc7942_0066 0.40 +0.2 66,266 - Synpcc7942_0066 0.40 -0.7 66,272 + Synpcc7942_0066 0.41 +0.3 66,280 - Synpcc7942_0066 0.41 -0.7 66,280 - Synpcc7942_0066 0.41 -0.2 66,280 - Synpcc7942_0066 0.41 -1.3 66,308 + Synpcc7942_0066 0.43 -1.2 66,308 - Synpcc7942_0066 0.43 -0.8 66,316 - Synpcc7942_0066 0.43 +1.1 66,339 + Synpcc7942_0066 0.45 -1.8 66,378 - Synpcc7942_0066 0.48 +0.7 66,382 - Synpcc7942_0066 0.48 -1.9 66,387 - Synpcc7942_0066 0.48 -1.2 66,393 + Synpcc7942_0066 0.49 -0.3 66,405 + Synpcc7942_0066 0.49 -0.4 66,425 + Synpcc7942_0066 0.51 +0.1 66,433 - +2.3 66,435 + Synpcc7942_0066 0.51 -1.0 66,458 + Synpcc7942_0066 0.53 -0.7 66,466 + Synpcc7942_0066 0.53 +1.0 66,466 + Synpcc7942_0066 0.53 -1.9 66,466 + Synpcc7942_0066 0.53 +1.1 66,474 - Synpcc7942_0066 0.54 +0.7 66,474 - Synpcc7942_0066 0.54 -1.5 66,474 - Synpcc7942_0066 0.54 -1.7 66,474 - Synpcc7942_0066 0.54 -2.3 66,474 - Synpcc7942_0066 0.54 -1.4 66,474 - Synpcc7942_0066 0.54 +0.1 66,541 + Synpcc7942_0066 0.58 +0.3 66,541 + Synpcc7942_0066 0.58 -0.2 66,541 + Synpcc7942_0066 0.58 -0.4 66,541 + Synpcc7942_0066 0.58 -0.5 66,541 + Synpcc7942_0066 0.58 -1.4 66,548 - Synpcc7942_0066 0.59 +0.7 66,549 - Synpcc7942_0066 0.59 -0.2 66,549 - Synpcc7942_0066 0.59 -1.2 66,549 - Synpcc7942_0066 0.59 +0.3 66,549 - Synpcc7942_0066 0.59 -1.6 66,549 - Synpcc7942_0066 0.59 -2.1 66,562 - Synpcc7942_0066 0.60 -0.0 66,573 - Synpcc7942_0066 0.60 -1.0 66,573 - Synpcc7942_0066 0.60 +1.3 66,596 - Synpcc7942_0066 0.62 +0.3 66,596 - Synpcc7942_0066 0.62 -1.0 66,606 - Synpcc7942_0066 0.63 +0.1 66,606 - Synpcc7942_0066 0.63 -0.5 66,606 - Synpcc7942_0066 0.63 +1.1 66,617 + Synpcc7942_0066 0.63 -0.9 66,627 - Synpcc7942_0066 0.64 -0.1 66,628 + Synpcc7942_0066 0.64 -2.7 66,649 + Synpcc7942_0066 0.65 -0.9 66,671 - Synpcc7942_0066 0.67 -2.3 66,766 - Synpcc7942_0066 0.73 +1.2 66,797 + Synpcc7942_0066 0.75 -1.4 66,797 + Synpcc7942_0066 0.75 -1.2 66,805 - Synpcc7942_0066 0.76 -0.3 66,805 - Synpcc7942_0066 0.76 -0.2 66,810 + Synpcc7942_0066 0.76 -1.2 66,868 + Synpcc7942_0066 0.80 -0.5 66,868 + Synpcc7942_0066 0.80 -1.4 66,885 + Synpcc7942_0066 0.81 +0.1 66,919 + Synpcc7942_0066 0.83 -0.9 66,939 - Synpcc7942_0066 0.85 -0.6 66,955 + Synpcc7942_0066 0.86 -1.6 67,034 - -0.9 67,034 - -0.4 67,071 + -1.3 67,079 - -0.6 67,081 + -2.0 67,099 - -1.0 67,112 + -0.0 67,112 + +2.3 67,133 - +1.0 67,133 - -0.2 67,133 - -0.0 67,136 + -0.7 67,174 + -0.7 67,180 + -0.3 67,182 - -1.8 67,217 + -1.2 67,217 + +0.5 67,217 + -0.6 67,217 + +0.4 67,222 + +0.1 67,227 + -1.2 67,227 + -0.4 67,246 + -0.0 67,264 + Synpcc7942_0067 0.11 -1.2 67,293 + Synpcc7942_0067 0.14 -0.9 67,325 - Synpcc7942_0067 0.18 -2.8 67,338 - Synpcc7942_0067 0.20 -1.6 67,356 + Synpcc7942_0067 0.22 -1.4 67,363 + Synpcc7942_0067 0.23 -0.2 67,365 - Synpcc7942_0067 0.23 -1.0 67,366 + Synpcc7942_0067 0.23 -0.5 67,366 + Synpcc7942_0067 0.23 -0.8 67,374 - Synpcc7942_0067 0.24 -1.4 67,374 - -0.5 67,374 - Synpcc7942_0067 0.24 -1.1 67,374 - Synpcc7942_0067 0.24 +0.6 67,381 - Synpcc7942_0067 0.25 -1.1 67,389 + Synpcc7942_0067 0.26 -0.9 67,399 + Synpcc7942_0067 0.27 -0.1 67,399 + Synpcc7942_0067 0.27 -1.3 67,433 + Synpcc7942_0067 0.32 +0.5 67,443 + Synpcc7942_0067 0.33 +0.5 67,451 + Synpcc7942_0067 0.34 -0.4 67,451 + Synpcc7942_0067 0.34 -0.3 67,456 + Synpcc7942_0067 0.34 -1.2 67,459 - Synpcc7942_0067 0.35 -0.9 67,459 - Synpcc7942_0067 0.35 -0.9 67,464 - Synpcc7942_0067 0.35 -0.1 67,464 - Synpcc7942_0067 0.35 -3.3 67,479 + +2.9 67,479 + Synpcc7942_0067 0.37 -1.2 67,487 - Synpcc7942_0067 0.38 -0.1 67,493 - Synpcc7942_0067 0.39 -0.4 67,536 + Synpcc7942_0067 0.44 -0.1 67,568 + Synpcc7942_0067 0.48 -1.2 67,591 + Synpcc7942_0067 0.51 -1.6 67,601 + Synpcc7942_0067 0.52 -0.8 67,621 - Synpcc7942_0067 0.55 -1.0 67,625 + Synpcc7942_0067 0.55 -0.7 67,625 + Synpcc7942_0067 0.55 +1.5 67,625 + Synpcc7942_0067 0.55 +0.2 67,633 - Synpcc7942_0067 0.56 -0.2 67,664 - Synpcc7942_0067 0.60 +1.0 67,664 - Synpcc7942_0067 0.60 -0.3 67,680 + Synpcc7942_0067 0.62 -1.0 67,685 + Synpcc7942_0067 0.63 -0.7 67,685 + Synpcc7942_0067 0.63 -1.9 67,688 - Synpcc7942_0067 0.63 -0.4 67,688 - Synpcc7942_0067 0.63 -0.5 67,688 - Synpcc7942_0067 0.63 -0.5 67,693 - Synpcc7942_0067 0.64 -2.4 67,694 + Synpcc7942_0067 0.64 +0.7 67,698 - Synpcc7942_0067 0.64 +0.2 67,732 + Synpcc7942_0067 0.69 -0.8 67,732 + Synpcc7942_0067 0.69 +0.3 67,742 + Synpcc7942_0067 0.70 +0.5 67,750 + Synpcc7942_0067 0.71 -0.2 67,750 - Synpcc7942_0067 0.71 -0.8 67,750 - Synpcc7942_0067 0.71 -0.3 67,750 - Synpcc7942_0067 0.71 -0.9 67,758 - Synpcc7942_0067 0.72 -0.5 67,791 + Synpcc7942_0067 0.76 -0.0 67,793 - Synpcc7942_0067 0.76 +0.4 67,929 + -1.6 67,934 + -0.1 67,942 - -1.0 67,950 - -1.0 67,952 - +0.3 67,968 + -0.4 67,976 - -0.3 67,988 + -2.0 67,988 + +3.2 67,996 - +0.8 67,996 - -0.3 68,018 - -1.0 68,067 - +1.0 68,080 + -0.4 68,080 + +0.2 68,082 + -0.3 68,082 + +0.4 68,090 - Synpcc7942_0068 0.10 -2.0 68,090 - Synpcc7942_0068 0.10 +2.3 68,090 - Synpcc7942_0068 0.10 +1.5 68,090 - Synpcc7942_0068 0.10 +0.7 68,090 - Synpcc7942_0068 0.10 +0.1 68,105 - Synpcc7942_0068 0.12 -2.7 68,166 - Synpcc7942_0068 0.18 -0.9 68,167 - Synpcc7942_0068 0.18 +0.1
Or see this region's nucleotide sequence