Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24620 and BWI76_RS24625 are separated by 113 nucleotides BWI76_RS24625 and BWI76_RS24630 overlap by 92 nucleotides BWI76_RS24630 and BWI76_RS24635 are separated by 74 nucleotides BWI76_RS24635 and BWI76_RS24640 overlap by 4 nucleotides
BWI76_RS24620: BWI76_RS24620 - PadR family transcriptional regulator, at 5,132,558 to 5,133,112
_RS24620
BWI76_RS24625: BWI76_RS24625 - hypothetical protein, at 5,133,226 to 5,133,417
_RS24625
BWI76_RS24630: BWI76_RS24630 - putrescine aminotransferase, at 5,133,326 to 5,134,732
_RS24630
BWI76_RS24635: BWI76_RS24635 - autoinducer-2 (AI-2) modifying protein LsrG, at 5,134,807 to 5,135,103
_RS24635
BWI76_RS24640: BWI76_RS24640 - aldolase, at 5,135,100 to 5,135,987
_RS24640
Position (kb) 5133
5134
5135 Strain fitness (log2 ratio) -1
0
1
2 at 5132.588 kb on - strand at 5132.764 kb on - strand at 5132.940 kb on + strand, within BWI76_RS24620 at 5132.960 kb on - strand, within BWI76_RS24620 at 5132.960 kb on - strand, within BWI76_RS24620 at 5132.960 kb on - strand, within BWI76_RS24620 at 5132.977 kb on + strand, within BWI76_RS24620 at 5133.122 kb on - strand at 5133.188 kb on - strand at 5133.282 kb on + strand, within BWI76_RS24625 at 5133.309 kb on + strand, within BWI76_RS24625 at 5133.317 kb on - strand, within BWI76_RS24625 at 5133.338 kb on + strand at 5133.360 kb on + strand at 5133.367 kb on - strand at 5133.646 kb on + strand, within BWI76_RS24630 at 5133.914 kb on + strand, within BWI76_RS24630 at 5134.078 kb on - strand, within BWI76_RS24630 at 5134.153 kb on + strand, within BWI76_RS24630 at 5134.369 kb on - strand, within BWI76_RS24630 at 5134.415 kb on - strand, within BWI76_RS24630 at 5134.482 kb on + strand, within BWI76_RS24630 at 5134.561 kb on - strand, within BWI76_RS24630 at 5134.786 kb on + strand at 5134.804 kb on + strand at 5134.804 kb on + strand at 5134.812 kb on - strand at 5134.812 kb on - strand at 5134.875 kb on + strand, within BWI76_RS24635 at 5134.909 kb on - strand, within BWI76_RS24635 at 5135.021 kb on + strand, within BWI76_RS24635 at 5135.041 kb on - strand, within BWI76_RS24635 at 5135.136 kb on - strand at 5135.285 kb on - strand, within BWI76_RS24640 at 5135.330 kb on - strand, within BWI76_RS24640 at 5135.490 kb on - strand, within BWI76_RS24640 at 5135.496 kb on - strand, within BWI76_RS24640 at 5135.557 kb on + strand, within BWI76_RS24640 at 5135.565 kb on - strand, within BWI76_RS24640 at 5135.722 kb on - strand, within BWI76_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 5,132,588 - -0.6 5,132,764 - +1.7 5,132,940 + BWI76_RS24620 0.69 +0.5 5,132,960 - BWI76_RS24620 0.72 -0.3 5,132,960 - BWI76_RS24620 0.72 -0.6 5,132,960 - BWI76_RS24620 0.72 -0.1 5,132,977 + BWI76_RS24620 0.75 -0.4 5,133,122 - -0.1 5,133,188 - +0.1 5,133,282 + BWI76_RS24625 0.29 +0.2 5,133,309 + BWI76_RS24625 0.43 +0.2 5,133,317 - BWI76_RS24625 0.47 +0.1 5,133,338 + +0.0 5,133,360 + +0.1 5,133,367 - -0.3 5,133,646 + BWI76_RS24630 0.23 -0.1 5,133,914 + BWI76_RS24630 0.42 -0.1 5,134,078 - BWI76_RS24630 0.53 +2.7 5,134,153 + BWI76_RS24630 0.59 -0.0 5,134,369 - BWI76_RS24630 0.74 +0.7 5,134,415 - BWI76_RS24630 0.77 +0.3 5,134,482 + BWI76_RS24630 0.82 -0.0 5,134,561 - BWI76_RS24630 0.88 -0.6 5,134,786 + -0.1 5,134,804 + +0.0 5,134,804 + +0.2 5,134,812 - +0.3 5,134,812 - -1.2 5,134,875 + BWI76_RS24635 0.23 -0.5 5,134,909 - BWI76_RS24635 0.34 -0.8 5,135,021 + BWI76_RS24635 0.72 -0.9 5,135,041 - BWI76_RS24635 0.79 -1.3 5,135,136 - +0.3 5,135,285 - BWI76_RS24640 0.21 -1.7 5,135,330 - BWI76_RS24640 0.26 +0.1 5,135,490 - BWI76_RS24640 0.44 +0.6 5,135,496 - BWI76_RS24640 0.45 -1.1 5,135,557 + BWI76_RS24640 0.51 -0.0 5,135,565 - BWI76_RS24640 0.52 +0.0 5,135,722 - BWI76_RS24640 0.70 -0.0
Or see this region's nucleotide sequence