Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_2169 and fur2 are separated by 64 nucleotides fur2 and dpsA are separated by 198 nucleotides dpsA and Synpcc7942_2172 are separated by 234 nucleotides Synpcc7942_2172 and idiC overlap by 4 nucleotides
Synpcc7942_2169: Synpcc7942_2169 - hypothetical protein, at 2,251,160 to 2,251,483
_2169
Synpcc7942_2170: fur2 - putative ferric uptake regulator, FUR family, at 2,251,548 to 2,251,997
fur2
Synpcc7942_2171: dpsA - starvation induced DNA binding protein, at 2,252,196 to 2,252,726
dpsA
Synpcc7942_2172: Synpcc7942_2172 - hypothetical protein, at 2,252,961 to 2,253,221
_2172
Synpcc7942_2173: idiC - hypothetical protein, at 2,253,218 to 2,253,778
idiC
Position (kb)
2252
2253 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2251.199 kb on - strand, within Synpcc7942_2169 at 2251.204 kb on - strand, within Synpcc7942_2169 at 2251.206 kb on + strand, within Synpcc7942_2169 at 2251.235 kb on + strand, within Synpcc7942_2169 at 2251.235 kb on + strand, within Synpcc7942_2169 at 2251.235 kb on + strand, within Synpcc7942_2169 at 2251.236 kb on - strand, within Synpcc7942_2169 at 2251.240 kb on + strand, within Synpcc7942_2169 at 2251.240 kb on + strand, within Synpcc7942_2169 at 2251.240 kb on + strand, within Synpcc7942_2169 at 2251.240 kb on + strand, within Synpcc7942_2169 at 2251.245 kb on + strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.248 kb on - strand, within Synpcc7942_2169 at 2251.255 kb on - strand, within Synpcc7942_2169 at 2251.255 kb on - strand, within Synpcc7942_2169 at 2251.264 kb on + strand, within Synpcc7942_2169 at 2251.269 kb on + strand, within Synpcc7942_2169 at 2251.269 kb on + strand, within Synpcc7942_2169 at 2251.272 kb on - strand, within Synpcc7942_2169 at 2251.272 kb on - strand, within Synpcc7942_2169 at 2251.312 kb on - strand, within Synpcc7942_2169 at 2251.314 kb on + strand, within Synpcc7942_2169 at 2251.315 kb on - strand, within Synpcc7942_2169 at 2251.322 kb on - strand, within Synpcc7942_2169 at 2251.325 kb on + strand, within Synpcc7942_2169 at 2251.325 kb on + strand, within Synpcc7942_2169 at 2251.325 kb on + strand, within Synpcc7942_2169 at 2251.327 kb on - strand, within Synpcc7942_2169 at 2251.333 kb on - strand, within Synpcc7942_2169 at 2251.333 kb on - strand, within Synpcc7942_2169 at 2251.333 kb on - strand, within Synpcc7942_2169 at 2251.333 kb on - strand, within Synpcc7942_2169 at 2251.346 kb on + strand, within Synpcc7942_2169 at 2251.385 kb on + strand, within Synpcc7942_2169 at 2251.385 kb on + strand, within Synpcc7942_2169 at 2251.393 kb on - strand, within Synpcc7942_2169 at 2251.393 kb on - strand, within Synpcc7942_2169 at 2251.403 kb on + strand, within Synpcc7942_2169 at 2251.412 kb on - strand, within Synpcc7942_2169 at 2251.490 kb on - strand at 2251.554 kb on - strand at 2251.580 kb on - strand at 2251.580 kb on - strand at 2251.589 kb on + strand at 2251.596 kb on + strand, within fur2 at 2251.596 kb on + strand, within fur2 at 2251.596 kb on + strand, within fur2 at 2251.596 kb on + strand, within fur2 at 2251.601 kb on + strand, within fur2 at 2251.602 kb on - strand, within fur2 at 2251.604 kb on - strand, within fur2 at 2251.604 kb on - strand, within fur2 at 2251.604 kb on - strand, within fur2 at 2251.619 kb on - strand, within fur2 at 2251.634 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.664 kb on + strand, within fur2 at 2251.668 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.672 kb on - strand, within fur2 at 2251.687 kb on + strand, within fur2 at 2251.724 kb on - strand, within fur2 at 2251.730 kb on + strand, within fur2 at 2251.743 kb on + strand, within fur2 at 2251.751 kb on - strand, within fur2 at 2251.751 kb on - strand, within fur2 at 2251.755 kb on + strand, within fur2 at 2251.757 kb on + strand, within fur2 at 2251.761 kb on - strand, within fur2 at 2251.763 kb on - strand, within fur2 at 2251.766 kb on + strand, within fur2 at 2251.771 kb on - strand, within fur2 at 2251.774 kb on - strand, within fur2 at 2251.774 kb on - strand, within fur2 at 2251.774 kb on - strand, within fur2 at 2251.789 kb on + strand, within fur2 at 2251.789 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.794 kb on + strand, within fur2 at 2251.795 kb on + strand, within fur2 at 2251.795 kb on + strand, within fur2 at 2251.795 kb on + strand, within fur2 at 2251.797 kb on - strand, within fur2 at 2251.797 kb on - strand, within fur2 at 2251.797 kb on - strand, within fur2 at 2251.801 kb on + strand, within fur2 at 2251.801 kb on + strand, within fur2 at 2251.802 kb on - strand, within fur2 at 2251.802 kb on - strand, within fur2 at 2251.802 kb on - strand, within fur2 at 2251.802 kb on - strand, within fur2 at 2251.802 kb on - strand, within fur2 at 2251.809 kb on - strand, within fur2 at 2251.837 kb on + strand, within fur2 at 2251.837 kb on + strand, within fur2 at 2251.844 kb on + strand, within fur2 at 2251.845 kb on - strand, within fur2 at 2251.847 kb on - strand, within fur2 at 2251.848 kb on + strand, within fur2 at 2251.848 kb on + strand, within fur2 at 2251.848 kb on + strand, within fur2 at 2251.852 kb on - strand, within fur2 at 2251.855 kb on + strand, within fur2 at 2251.856 kb on - strand, within fur2 at 2251.856 kb on - strand, within fur2 at 2251.856 kb on - strand, within fur2 at 2251.906 kb on + strand, within fur2 at 2251.937 kb on - strand, within fur2 at 2251.952 kb on - strand, within fur2 at 2251.959 kb on - strand at 2251.990 kb on + strand at 2252.021 kb on - strand at 2252.106 kb on + strand at 2252.111 kb on + strand at 2252.203 kb on + strand at 2252.222 kb on - strand at 2252.340 kb on + strand, within dpsA at 2252.359 kb on + strand, within dpsA at 2252.391 kb on + strand, within dpsA at 2252.399 kb on - strand, within dpsA at 2252.424 kb on + strand, within dpsA at 2252.524 kb on - strand, within dpsA at 2252.614 kb on - strand, within dpsA at 2252.614 kb on - strand, within dpsA at 2252.628 kb on + strand, within dpsA at 2252.668 kb on - strand, within dpsA at 2252.796 kb on - strand at 2252.951 kb on + strand at 2252.951 kb on + strand at 2252.951 kb on + strand at 2252.958 kb on + strand at 2252.959 kb on - strand at 2252.959 kb on - strand at 2252.986 kb on + strand at 2253.048 kb on + strand, within Synpcc7942_2172 at 2253.059 kb on + strand, within Synpcc7942_2172 at 2253.119 kb on + strand, within Synpcc7942_2172 at 2253.127 kb on - strand, within Synpcc7942_2172 at 2253.181 kb on + strand, within Synpcc7942_2172 at 2253.234 kb on + strand at 2253.242 kb on - strand at 2253.242 kb on - strand at 2253.247 kb on - strand at 2253.312 kb on - strand, within idiC at 2253.319 kb on + strand, within idiC at 2253.334 kb on - strand, within idiC at 2253.353 kb on + strand, within idiC at 2253.355 kb on - strand, within idiC at 2253.394 kb on - strand, within idiC at 2253.420 kb on + strand, within idiC at 2253.420 kb on + strand, within idiC at 2253.447 kb on - strand, within idiC at 2253.482 kb on + strand, within idiC at 2253.492 kb on + strand, within idiC at 2253.604 kb on + strand, within idiC at 2253.654 kb on - strand, within idiC at 2253.673 kb on - strand, within idiC at 2253.683 kb on - strand, within idiC at 2253.700 kb on - strand, within idiC
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 2,251,199 - Synpcc7942_2169 0.12 -0.8 2,251,204 - Synpcc7942_2169 0.14 +0.3 2,251,206 + Synpcc7942_2169 0.14 -0.9 2,251,235 + Synpcc7942_2169 0.23 +0.7 2,251,235 + Synpcc7942_2169 0.23 +0.7 2,251,235 + Synpcc7942_2169 0.23 +0.4 2,251,236 - Synpcc7942_2169 0.23 -0.9 2,251,240 + Synpcc7942_2169 0.25 -1.8 2,251,240 + Synpcc7942_2169 0.25 +0.3 2,251,240 + Synpcc7942_2169 0.25 -0.8 2,251,240 + Synpcc7942_2169 0.25 +0.7 2,251,245 + Synpcc7942_2169 0.26 -0.6 2,251,248 - Synpcc7942_2169 0.27 -0.3 2,251,248 - Synpcc7942_2169 0.27 -0.5 2,251,248 - Synpcc7942_2169 0.27 -0.8 2,251,248 - Synpcc7942_2169 0.27 +0.3 2,251,248 - Synpcc7942_2169 0.27 +0.3 2,251,248 - Synpcc7942_2169 0.27 +0.4 2,251,248 - Synpcc7942_2169 0.27 +0.2 2,251,255 - Synpcc7942_2169 0.29 -0.2 2,251,255 - Synpcc7942_2169 0.29 -0.8 2,251,264 + Synpcc7942_2169 0.32 +0.1 2,251,269 + Synpcc7942_2169 0.34 +0.7 2,251,269 + Synpcc7942_2169 0.34 -0.5 2,251,272 - Synpcc7942_2169 0.35 +0.4 2,251,272 - Synpcc7942_2169 0.35 -0.4 2,251,312 - Synpcc7942_2169 0.47 +0.8 2,251,314 + Synpcc7942_2169 0.48 +1.0 2,251,315 - Synpcc7942_2169 0.48 +0.4 2,251,322 - Synpcc7942_2169 0.50 +0.4 2,251,325 + Synpcc7942_2169 0.51 -2.0 2,251,325 + Synpcc7942_2169 0.51 -1.2 2,251,325 + Synpcc7942_2169 0.51 +0.2 2,251,327 - Synpcc7942_2169 0.52 +0.5 2,251,333 - Synpcc7942_2169 0.53 -0.5 2,251,333 - Synpcc7942_2169 0.53 -0.3 2,251,333 - Synpcc7942_2169 0.53 -1.0 2,251,333 - Synpcc7942_2169 0.53 -0.5 2,251,346 + Synpcc7942_2169 0.57 +1.0 2,251,385 + Synpcc7942_2169 0.69 +0.5 2,251,385 + Synpcc7942_2169 0.69 +0.2 2,251,393 - Synpcc7942_2169 0.72 -0.3 2,251,393 - Synpcc7942_2169 0.72 -0.1 2,251,403 + Synpcc7942_2169 0.75 -0.7 2,251,412 - Synpcc7942_2169 0.78 -0.8 2,251,490 - -0.8 2,251,554 - +1.2 2,251,580 - -0.7 2,251,580 - +1.0 2,251,589 + -1.3 2,251,596 + fur2 Synpcc7942_2170 0.11 -1.3 2,251,596 + fur2 Synpcc7942_2170 0.11 +0.7 2,251,596 + fur2 Synpcc7942_2170 0.11 -1.7 2,251,596 + fur2 Synpcc7942_2170 0.11 -0.6 2,251,601 + fur2 Synpcc7942_2170 0.12 +0.1 2,251,602 - fur2 Synpcc7942_2170 0.12 -1.0 2,251,604 - fur2 Synpcc7942_2170 0.12 -1.8 2,251,604 - fur2 Synpcc7942_2170 0.12 +4.3 2,251,604 - fur2 Synpcc7942_2170 0.12 -0.9 2,251,619 - fur2 Synpcc7942_2170 0.16 -1.3 2,251,634 + fur2 Synpcc7942_2170 0.19 +0.7 2,251,664 + fur2 Synpcc7942_2170 0.26 -1.7 2,251,664 + fur2 Synpcc7942_2170 0.26 -1.9 2,251,664 + fur2 Synpcc7942_2170 0.26 -0.6 2,251,664 + fur2 Synpcc7942_2170 0.26 -2.8 2,251,664 + fur2 Synpcc7942_2170 0.26 +0.0 2,251,664 + fur2 Synpcc7942_2170 0.26 -0.7 2,251,664 + fur2 Synpcc7942_2170 0.26 -0.6 2,251,664 + fur2 Synpcc7942_2170 0.26 +0.4 2,251,664 + fur2 Synpcc7942_2170 0.26 -1.3 2,251,664 + fur2 Synpcc7942_2170 0.26 -1.6 2,251,664 + fur2 Synpcc7942_2170 0.26 -1.7 2,251,668 - fur2 Synpcc7942_2170 0.27 +0.2 2,251,672 - fur2 Synpcc7942_2170 0.28 -0.6 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.4 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.1 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.4 2,251,672 - fur2 Synpcc7942_2170 0.28 -0.3 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.4 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.6 2,251,672 - fur2 Synpcc7942_2170 0.28 +0.8 2,251,672 - fur2 Synpcc7942_2170 0.28 -1.9 2,251,687 + fur2 Synpcc7942_2170 0.31 -0.6 2,251,724 - fur2 Synpcc7942_2170 0.39 -1.4 2,251,730 + fur2 Synpcc7942_2170 0.40 +0.3 2,251,743 + fur2 Synpcc7942_2170 0.43 -1.2 2,251,751 - fur2 Synpcc7942_2170 0.45 +0.4 2,251,751 - fur2 Synpcc7942_2170 0.45 -0.6 2,251,755 + fur2 Synpcc7942_2170 0.46 +0.3 2,251,757 + fur2 Synpcc7942_2170 0.46 -0.6 2,251,761 - fur2 Synpcc7942_2170 0.47 +0.0 2,251,763 - fur2 Synpcc7942_2170 0.48 -1.0 2,251,766 + fur2 Synpcc7942_2170 0.48 +0.1 2,251,771 - fur2 Synpcc7942_2170 0.50 -0.1 2,251,774 - fur2 Synpcc7942_2170 0.50 -0.6 2,251,774 - fur2 Synpcc7942_2170 0.50 -0.7 2,251,774 - fur2 Synpcc7942_2170 0.50 -2.5 2,251,789 + fur2 Synpcc7942_2170 0.54 -0.8 2,251,789 + fur2 Synpcc7942_2170 0.54 +0.7 2,251,794 + fur2 Synpcc7942_2170 0.55 -1.0 2,251,794 + fur2 Synpcc7942_2170 0.55 -0.6 2,251,794 + fur2 Synpcc7942_2170 0.55 +0.4 2,251,794 + fur2 Synpcc7942_2170 0.55 -1.8 2,251,794 + fur2 Synpcc7942_2170 0.55 -2.3 2,251,794 + fur2 Synpcc7942_2170 0.55 +0.0 2,251,794 + fur2 Synpcc7942_2170 0.55 +0.6 2,251,794 + fur2 Synpcc7942_2170 0.55 -0.3 2,251,794 + fur2 Synpcc7942_2170 0.55 -0.6 2,251,794 + fur2 Synpcc7942_2170 0.55 -0.2 2,251,794 + fur2 Synpcc7942_2170 0.55 -0.5 2,251,795 + fur2 Synpcc7942_2170 0.55 +0.2 2,251,795 + fur2 Synpcc7942_2170 0.55 -0.5 2,251,795 + fur2 Synpcc7942_2170 0.55 +1.3 2,251,797 - fur2 Synpcc7942_2170 0.55 -0.1 2,251,797 - fur2 Synpcc7942_2170 0.55 -1.3 2,251,797 - fur2 Synpcc7942_2170 0.55 -1.9 2,251,801 + fur2 Synpcc7942_2170 0.56 -0.4 2,251,801 + fur2 Synpcc7942_2170 0.56 -1.6 2,251,802 - fur2 Synpcc7942_2170 0.56 -1.0 2,251,802 - fur2 Synpcc7942_2170 0.56 -0.1 2,251,802 - fur2 Synpcc7942_2170 0.56 -0.1 2,251,802 - fur2 Synpcc7942_2170 0.56 -0.7 2,251,802 - fur2 Synpcc7942_2170 0.56 +0.1 2,251,809 - fur2 Synpcc7942_2170 0.58 +0.0 2,251,837 + fur2 Synpcc7942_2170 0.64 -1.4 2,251,837 + fur2 Synpcc7942_2170 0.64 +0.8 2,251,844 + fur2 Synpcc7942_2170 0.66 +0.2 2,251,845 - fur2 Synpcc7942_2170 0.66 -0.3 2,251,847 - fur2 Synpcc7942_2170 0.66 -1.3 2,251,848 + fur2 Synpcc7942_2170 0.67 -0.1 2,251,848 + fur2 Synpcc7942_2170 0.67 -0.8 2,251,848 + fur2 Synpcc7942_2170 0.67 -0.5 2,251,852 - fur2 Synpcc7942_2170 0.68 -1.4 2,251,855 + fur2 Synpcc7942_2170 0.68 +0.4 2,251,856 - fur2 Synpcc7942_2170 0.68 -0.7 2,251,856 - fur2 Synpcc7942_2170 0.68 -1.2 2,251,856 - fur2 Synpcc7942_2170 0.68 -0.4 2,251,906 + fur2 Synpcc7942_2170 0.80 -1.6 2,251,937 - fur2 Synpcc7942_2170 0.86 -1.2 2,251,952 - fur2 Synpcc7942_2170 0.90 +0.0 2,251,959 - -1.4 2,251,990 + +0.7 2,252,021 - -1.0 2,252,106 + -2.1 2,252,111 + -0.3 2,252,203 + -2.5 2,252,222 - -3.8 2,252,340 + dpsA Synpcc7942_2171 0.27 -1.5 2,252,359 + dpsA Synpcc7942_2171 0.31 -0.3 2,252,391 + dpsA Synpcc7942_2171 0.37 -1.2 2,252,399 - dpsA Synpcc7942_2171 0.38 -1.2 2,252,424 + dpsA Synpcc7942_2171 0.43 -1.6 2,252,524 - dpsA Synpcc7942_2171 0.62 -2.3 2,252,614 - dpsA Synpcc7942_2171 0.79 -3.1 2,252,614 - dpsA Synpcc7942_2171 0.79 -1.6 2,252,628 + dpsA Synpcc7942_2171 0.81 -1.0 2,252,668 - dpsA Synpcc7942_2171 0.89 -1.2 2,252,796 - -1.3 2,252,951 + -0.3 2,252,951 + -0.3 2,252,951 + -3.7 2,252,958 + -2.8 2,252,959 - +1.0 2,252,959 - -2.7 2,252,986 + +0.4 2,253,048 + Synpcc7942_2172 0.33 -2.5 2,253,059 + Synpcc7942_2172 0.38 -0.6 2,253,119 + Synpcc7942_2172 0.61 -0.3 2,253,127 - Synpcc7942_2172 0.64 +0.2 2,253,181 + Synpcc7942_2172 0.84 -1.3 2,253,234 + +0.0 2,253,242 - -1.9 2,253,242 - -0.3 2,253,247 - +0.0 2,253,312 - idiC Synpcc7942_2173 0.17 +0.4 2,253,319 + idiC Synpcc7942_2173 0.18 -5.1 2,253,334 - idiC Synpcc7942_2173 0.21 -1.4 2,253,353 + idiC Synpcc7942_2173 0.24 -1.2 2,253,355 - idiC Synpcc7942_2173 0.24 -1.4 2,253,394 - idiC Synpcc7942_2173 0.31 -2.8 2,253,420 + idiC Synpcc7942_2173 0.36 -2.6 2,253,420 + idiC Synpcc7942_2173 0.36 -2.4 2,253,447 - idiC Synpcc7942_2173 0.41 -0.8 2,253,482 + idiC Synpcc7942_2173 0.47 -0.8 2,253,492 + idiC Synpcc7942_2173 0.49 -1.3 2,253,604 + idiC Synpcc7942_2173 0.69 -1.8 2,253,654 - idiC Synpcc7942_2173 0.78 -1.0 2,253,673 - idiC Synpcc7942_2173 0.81 -1.6 2,253,683 - idiC Synpcc7942_2173 0.83 -3.0 2,253,700 - idiC Synpcc7942_2173 0.86 -1.6
Or see this region's nucleotide sequence