Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proS and Synpcc7942_1960 are separated by 47 nucleotides Synpcc7942_1960 and fbp are separated by 157 nucleotides fbp and psbY are separated by 46 nucleotides
Synpcc7942_1959: proS - prolyl-tRNA synthetase, at 2,030,340 to 2,032,142
proS
Synpcc7942_1960: Synpcc7942_1960 - hypothetical protein, at 2,032,190 to 2,032,696
_1960
Synpcc7942_1961: fbp - ferripyochelin binding protein, at 2,032,854 to 2,033,402
fbp
Synpcc7942_1962: psbY - photosystem II PsbY protein, at 2,033,449 to 2,033,571
psbY
Position (kb)
2032
2033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2032.100 kb on + strand at 2032.136 kb on + strand at 2032.143 kb on + strand at 2032.144 kb on - strand at 2032.144 kb on - strand at 2032.146 kb on - strand at 2032.166 kb on - strand at 2032.166 kb on - strand at 2032.166 kb on - strand at 2032.207 kb on + strand at 2032.213 kb on - strand at 2032.215 kb on - strand at 2032.215 kb on - strand at 2032.215 kb on - strand at 2032.217 kb on + strand at 2032.217 kb on + strand at 2032.217 kb on + strand at 2032.220 kb on - strand at 2032.222 kb on + strand at 2032.225 kb on - strand at 2032.225 kb on - strand at 2032.290 kb on + strand, within Synpcc7942_1960 at 2032.298 kb on - strand at 2032.298 kb on - strand, within Synpcc7942_1960 at 2032.336 kb on + strand, within Synpcc7942_1960 at 2032.337 kb on - strand, within Synpcc7942_1960 at 2032.337 kb on - strand, within Synpcc7942_1960 at 2032.359 kb on - strand, within Synpcc7942_1960 at 2032.363 kb on + strand, within Synpcc7942_1960 at 2032.371 kb on - strand, within Synpcc7942_1960 at 2032.371 kb on - strand, within Synpcc7942_1960 at 2032.394 kb on - strand, within Synpcc7942_1960 at 2032.401 kb on + strand, within Synpcc7942_1960 at 2032.406 kb on + strand, within Synpcc7942_1960 at 2032.406 kb on + strand at 2032.416 kb on - strand, within Synpcc7942_1960 at 2032.426 kb on - strand, within Synpcc7942_1960 at 2032.426 kb on - strand, within Synpcc7942_1960 at 2032.426 kb on - strand, within Synpcc7942_1960 at 2032.442 kb on + strand, within Synpcc7942_1960 at 2032.507 kb on - strand, within Synpcc7942_1960 at 2032.517 kb on + strand, within Synpcc7942_1960 at 2032.557 kb on + strand, within Synpcc7942_1960 at 2032.597 kb on + strand, within Synpcc7942_1960 at 2032.603 kb on - strand, within Synpcc7942_1960 at 2032.619 kb on + strand, within Synpcc7942_1960 at 2032.668 kb on + strand at 2032.677 kb on - strand at 2032.683 kb on + strand at 2032.691 kb on - strand at 2032.778 kb on - strand at 2032.874 kb on + strand at 2032.880 kb on + strand at 2032.882 kb on - strand at 2032.882 kb on - strand at 2032.923 kb on + strand, within fbp at 2032.978 kb on - strand, within fbp at 2032.980 kb on + strand, within fbp at 2032.983 kb on - strand, within fbp at 2033.011 kb on - strand, within fbp at 2033.018 kb on + strand, within fbp at 2033.028 kb on + strand at 2033.028 kb on + strand, within fbp at 2033.028 kb on + strand, within fbp at 2033.028 kb on + strand, within fbp at 2033.036 kb on - strand, within fbp at 2033.036 kb on - strand, within fbp at 2033.036 kb on - strand, within fbp at 2033.036 kb on - strand, within fbp at 2033.036 kb on - strand, within fbp at 2033.038 kb on + strand, within fbp at 2033.046 kb on - strand, within fbp at 2033.051 kb on - strand, within fbp at 2033.054 kb on - strand, within fbp at 2033.056 kb on - strand, within fbp at 2033.066 kb on + strand, within fbp at 2033.073 kb on + strand, within fbp at 2033.092 kb on + strand, within fbp at 2033.092 kb on + strand, within fbp at 2033.092 kb on + strand, within fbp at 2033.100 kb on - strand, within fbp at 2033.102 kb on - strand, within fbp at 2033.102 kb on - strand, within fbp at 2033.107 kb on - strand, within fbp at 2033.168 kb on - strand, within fbp at 2033.173 kb on - strand, within fbp at 2033.175 kb on + strand, within fbp at 2033.175 kb on + strand, within fbp at 2033.183 kb on - strand, within fbp at 2033.183 kb on - strand, within fbp at 2033.225 kb on + strand, within fbp at 2033.248 kb on + strand, within fbp at 2033.268 kb on - strand, within fbp at 2033.275 kb on - strand, within fbp at 2033.321 kb on + strand, within fbp at 2033.321 kb on + strand, within fbp at 2033.329 kb on - strand, within fbp at 2033.329 kb on - strand at 2033.337 kb on + strand, within fbp at 2033.358 kb on - strand at 2033.454 kb on - strand at 2033.473 kb on - strand, within psbY at 2033.504 kb on - strand, within psbY at 2033.508 kb on + strand, within psbY at 2033.538 kb on + strand, within psbY at 2033.558 kb on - strand, within psbY at 2033.565 kb on - strand at 2033.649 kb on - strand at 2033.649 kb on - strand at 2033.659 kb on - strand at 2033.659 kb on - strand at 2033.659 kb on - strand at 2033.678 kb on - strand at 2033.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 2,032,100 + -0.0 2,032,136 + -0.2 2,032,143 + -1.0 2,032,144 - -0.5 2,032,144 - -1.2 2,032,146 - -0.3 2,032,166 - -0.8 2,032,166 - +0.2 2,032,166 - -0.4 2,032,207 + -0.4 2,032,213 - -0.3 2,032,215 - +0.3 2,032,215 - +0.6 2,032,215 - -0.8 2,032,217 + -3.7 2,032,217 + -0.4 2,032,217 + -1.4 2,032,220 - +0.2 2,032,222 + -0.4 2,032,225 - -0.8 2,032,225 - -2.9 2,032,290 + Synpcc7942_1960 0.20 -1.8 2,032,298 - -0.0 2,032,298 - Synpcc7942_1960 0.21 -2.2 2,032,336 + Synpcc7942_1960 0.29 -1.4 2,032,337 - Synpcc7942_1960 0.29 -1.2 2,032,337 - Synpcc7942_1960 0.29 -1.2 2,032,359 - Synpcc7942_1960 0.33 -1.2 2,032,363 + Synpcc7942_1960 0.34 -1.9 2,032,371 - Synpcc7942_1960 0.36 -0.1 2,032,371 - Synpcc7942_1960 0.36 -0.0 2,032,394 - Synpcc7942_1960 0.40 -2.0 2,032,401 + Synpcc7942_1960 0.42 -1.1 2,032,406 + Synpcc7942_1960 0.43 -0.4 2,032,406 + +2.0 2,032,416 - Synpcc7942_1960 0.45 -0.6 2,032,426 - Synpcc7942_1960 0.47 -1.1 2,032,426 - Synpcc7942_1960 0.47 -1.5 2,032,426 - Synpcc7942_1960 0.47 -1.5 2,032,442 + Synpcc7942_1960 0.50 -1.6 2,032,507 - Synpcc7942_1960 0.63 -2.0 2,032,517 + Synpcc7942_1960 0.64 -0.7 2,032,557 + Synpcc7942_1960 0.72 -2.1 2,032,597 + Synpcc7942_1960 0.80 -1.4 2,032,603 - Synpcc7942_1960 0.81 -0.2 2,032,619 + Synpcc7942_1960 0.85 -2.1 2,032,668 + -2.2 2,032,677 - -3.0 2,032,683 + -0.6 2,032,691 - -0.0 2,032,778 - -1.5 2,032,874 + -0.0 2,032,880 + -1.1 2,032,882 - -0.6 2,032,882 - -0.9 2,032,923 + fbp Synpcc7942_1961 0.13 -0.5 2,032,978 - fbp Synpcc7942_1961 0.23 -0.7 2,032,980 + fbp Synpcc7942_1961 0.23 +0.1 2,032,983 - fbp Synpcc7942_1961 0.23 +0.1 2,033,011 - fbp Synpcc7942_1961 0.29 +0.4 2,033,018 + fbp Synpcc7942_1961 0.30 -0.7 2,033,028 + +2.0 2,033,028 + fbp Synpcc7942_1961 0.32 -0.5 2,033,028 + fbp Synpcc7942_1961 0.32 -0.1 2,033,028 + fbp Synpcc7942_1961 0.32 -2.0 2,033,036 - fbp Synpcc7942_1961 0.33 +1.0 2,033,036 - fbp Synpcc7942_1961 0.33 -1.4 2,033,036 - fbp Synpcc7942_1961 0.33 +0.7 2,033,036 - fbp Synpcc7942_1961 0.33 +0.4 2,033,036 - fbp Synpcc7942_1961 0.33 -1.9 2,033,038 + fbp Synpcc7942_1961 0.34 +0.0 2,033,046 - fbp Synpcc7942_1961 0.35 -0.9 2,033,051 - fbp Synpcc7942_1961 0.36 -1.7 2,033,054 - fbp Synpcc7942_1961 0.36 -0.3 2,033,056 - fbp Synpcc7942_1961 0.37 -0.5 2,033,066 + fbp Synpcc7942_1961 0.39 -1.1 2,033,073 + fbp Synpcc7942_1961 0.40 -2.7 2,033,092 + fbp Synpcc7942_1961 0.43 -0.8 2,033,092 + fbp Synpcc7942_1961 0.43 -0.8 2,033,092 + fbp Synpcc7942_1961 0.43 -0.5 2,033,100 - fbp Synpcc7942_1961 0.45 -1.7 2,033,102 - fbp Synpcc7942_1961 0.45 -1.6 2,033,102 - fbp Synpcc7942_1961 0.45 +1.0 2,033,107 - fbp Synpcc7942_1961 0.46 +0.3 2,033,168 - fbp Synpcc7942_1961 0.57 -0.6 2,033,173 - fbp Synpcc7942_1961 0.58 -0.6 2,033,175 + fbp Synpcc7942_1961 0.58 -0.9 2,033,175 + fbp Synpcc7942_1961 0.58 -0.5 2,033,183 - fbp Synpcc7942_1961 0.60 -0.2 2,033,183 - fbp Synpcc7942_1961 0.60 -0.5 2,033,225 + fbp Synpcc7942_1961 0.68 +0.3 2,033,248 + fbp Synpcc7942_1961 0.72 -2.0 2,033,268 - fbp Synpcc7942_1961 0.75 -0.4 2,033,275 - fbp Synpcc7942_1961 0.77 -1.9 2,033,321 + fbp Synpcc7942_1961 0.85 -0.6 2,033,321 + fbp Synpcc7942_1961 0.85 +0.7 2,033,329 - fbp Synpcc7942_1961 0.87 +1.6 2,033,329 - +3.6 2,033,337 + fbp Synpcc7942_1961 0.88 -0.8 2,033,358 - -0.7 2,033,454 - +0.9 2,033,473 - psbY Synpcc7942_1962 0.20 -1.0 2,033,504 - psbY Synpcc7942_1962 0.45 -1.3 2,033,508 + psbY Synpcc7942_1962 0.48 -0.1 2,033,538 + psbY Synpcc7942_1962 0.72 +0.1 2,033,558 - psbY Synpcc7942_1962 0.89 +2.0 2,033,565 - -0.3 2,033,649 - -0.1 2,033,649 - -0.1 2,033,659 - +2.0 2,033,659 - -0.6 2,033,659 - -0.3 2,033,678 - -0.5 2,033,693 - +0.8
Or see this region's nucleotide sequence