Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1889 and Synpcc7942_1890 are separated by 165 nucleotides Synpcc7942_1890 and labA are separated by 157 nucleotides labA and Synpcc7942_1892 overlap by 4 nucleotides Synpcc7942_1892 and natA overlap by 25 nucleotides
Synpcc7942_1889: Synpcc7942_1889 - hypothetical protein, at 1,961,987 to 1,963,582
_1889
Synpcc7942_1890: Synpcc7942_1890 - hypothetical protein, at 1,963,748 to 1,964,254
_1890
Synpcc7942_1891: labA - hypothetical protein, at 1,964,412 to 1,964,972
labA
Synpcc7942_1892: Synpcc7942_1892 - Rhodanese-like, at 1,964,969 to 1,965,778
_1892
Synpcc7942_1893: natA - ATPase, at 1,965,754 to 1,966,530
natA
Position (kb) 1964
1965 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1963.419 kb on - strand, within Synpcc7942_1889 at 1963.419 kb on - strand, within Synpcc7942_1889 at 1963.423 kb on + strand at 1963.448 kb on + strand at 1963.448 kb on + strand at 1963.449 kb on + strand at 1963.456 kb on - strand at 1963.457 kb on - strand at 1963.469 kb on + strand at 1963.469 kb on + strand at 1963.470 kb on - strand at 1963.470 kb on - strand at 1963.477 kb on - strand at 1963.479 kb on - strand at 1963.538 kb on + strand at 1963.538 kb on + strand at 1963.538 kb on + strand at 1963.538 kb on + strand at 1963.538 kb on + strand at 1963.544 kb on - strand at 1963.544 kb on - strand at 1963.546 kb on - strand at 1963.548 kb on - strand at 1963.555 kb on + strand at 1963.555 kb on + strand at 1963.563 kb on - strand at 1963.578 kb on - strand at 1963.628 kb on - strand at 1963.653 kb on - strand at 1963.683 kb on + strand at 1963.686 kb on + strand at 1963.688 kb on + strand at 1963.694 kb on - strand at 1963.696 kb on + strand at 1963.696 kb on + strand at 1963.708 kb on + strand at 1963.708 kb on + strand at 1963.708 kb on + strand at 1963.714 kb on - strand at 1963.716 kb on - strand at 1963.716 kb on - strand at 1963.716 kb on - strand at 1963.716 kb on - strand at 1963.728 kb on + strand at 1963.738 kb on + strand at 1963.738 kb on + strand at 1963.750 kb on - strand at 1963.765 kb on + strand at 1963.765 kb on + strand at 1963.773 kb on - strand at 1963.773 kb on - strand at 1963.788 kb on - strand at 1963.808 kb on - strand, within Synpcc7942_1890 at 1963.820 kb on - strand, within Synpcc7942_1890 at 1963.836 kb on - strand, within Synpcc7942_1890 at 1963.858 kb on - strand, within Synpcc7942_1890 at 1963.868 kb on + strand, within Synpcc7942_1890 at 1963.876 kb on + strand, within Synpcc7942_1890 at 1963.876 kb on - strand, within Synpcc7942_1890 at 1963.876 kb on - strand, within Synpcc7942_1890 at 1963.877 kb on - strand, within Synpcc7942_1890 at 1963.877 kb on - strand, within Synpcc7942_1890 at 1963.879 kb on - strand, within Synpcc7942_1890 at 1963.882 kb on + strand, within Synpcc7942_1890 at 1963.884 kb on - strand, within Synpcc7942_1890 at 1963.909 kb on - strand, within Synpcc7942_1890 at 1963.936 kb on + strand, within Synpcc7942_1890 at 1963.937 kb on + strand, within Synpcc7942_1890 at 1963.937 kb on + strand, within Synpcc7942_1890 at 1963.945 kb on - strand, within Synpcc7942_1890 at 1963.945 kb on - strand, within Synpcc7942_1890 at 1963.949 kb on + strand, within Synpcc7942_1890 at 1963.949 kb on + strand, within Synpcc7942_1890 at 1963.957 kb on - strand, within Synpcc7942_1890 at 1963.958 kb on + strand, within Synpcc7942_1890 at 1963.979 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1964.008 kb on - strand, within Synpcc7942_1890 at 1964.013 kb on - strand, within Synpcc7942_1890 at 1964.031 kb on + strand, within Synpcc7942_1890 at 1964.043 kb on - strand, within Synpcc7942_1890 at 1964.046 kb on + strand, within Synpcc7942_1890 at 1964.067 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.092 kb on + strand, within Synpcc7942_1890 at 1964.100 kb on - strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.120 kb on - strand, within Synpcc7942_1890 at 1964.184 kb on + strand, within Synpcc7942_1890 at 1964.204 kb on - strand at 1964.209 kb on - strand at 1964.210 kb on - strand at 1964.210 kb on - strand at 1964.213 kb on + strand at 1964.215 kb on - strand at 1964.237 kb on - strand at 1964.243 kb on - strand at 1964.301 kb on + strand at 1964.301 kb on + strand at 1964.331 kb on + strand at 1964.366 kb on + strand at 1964.383 kb on - strand at 1964.513 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.554 kb on - strand, within labA at 1964.554 kb on - strand, within labA at 1964.620 kb on - strand, within labA at 1964.629 kb on - strand, within labA at 1964.674 kb on - strand, within labA at 1964.762 kb on + strand, within labA at 1964.929 kb on + strand at 1964.937 kb on - strand at 1964.937 kb on - strand at 1964.966 kb on + strand at 1964.974 kb on - strand at 1964.981 kb on - strand at 1964.989 kb on - strand at 1965.008 kb on + strand at 1965.027 kb on + strand at 1965.032 kb on - strand at 1965.056 kb on + strand, within Synpcc7942_1892 at 1965.064 kb on - strand at 1965.087 kb on + strand, within Synpcc7942_1892 at 1965.095 kb on - strand, within Synpcc7942_1892 at 1965.097 kb on - strand, within Synpcc7942_1892 at 1965.121 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.229 kb on + strand, within Synpcc7942_1892 at 1965.231 kb on - strand, within Synpcc7942_1892 at 1965.269 kb on + strand, within Synpcc7942_1892 at 1965.282 kb on - strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.336 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.352 kb on + strand, within Synpcc7942_1892 at 1965.355 kb on - strand, within Synpcc7942_1892 at 1965.446 kb on + strand, within Synpcc7942_1892 at 1965.452 kb on + strand, within Synpcc7942_1892 at 1965.460 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.513 kb on + strand, within Synpcc7942_1892 at 1965.521 kb on + strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.600 kb on - strand, within Synpcc7942_1892 at 1965.634 kb on - strand, within Synpcc7942_1892 at 1965.691 kb on + strand, within Synpcc7942_1892 at 1965.750 kb on - strand at 1965.757 kb on + strand at 1965.790 kb on - strand at 1965.813 kb on - strand at 1965.876 kb on - strand, within natA at 1965.882 kb on + strand, within natA at 1965.894 kb on - strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.926 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,963,419 - Synpcc7942_1889 0.90 +0.9 1,963,419 - Synpcc7942_1889 0.90 -0.6 1,963,423 + +0.5 1,963,448 + +0.1 1,963,448 + +0.8 1,963,449 + +0.2 1,963,456 - -0.9 1,963,457 - -1.0 1,963,469 + +0.4 1,963,469 + -1.1 1,963,470 - +0.1 1,963,470 - -0.9 1,963,477 - +1.6 1,963,479 - -1.0 1,963,538 + -1.5 1,963,538 + +1.1 1,963,538 + +0.6 1,963,538 + -0.1 1,963,538 + +2.0 1,963,544 - -0.1 1,963,544 - +0.2 1,963,546 - +0.8 1,963,548 - +0.4 1,963,555 + -0.8 1,963,555 + +0.4 1,963,563 - +0.1 1,963,578 - +1.4 1,963,628 - -0.7 1,963,653 - -0.3 1,963,683 + -0.9 1,963,686 + -0.8 1,963,688 + -0.0 1,963,694 - -0.5 1,963,696 + -1.5 1,963,696 + +1.0 1,963,708 + -1.2 1,963,708 + +0.7 1,963,708 + +0.1 1,963,714 - +0.4 1,963,716 - -0.3 1,963,716 - -0.2 1,963,716 - -0.5 1,963,716 - -0.3 1,963,728 + -0.3 1,963,738 + -0.2 1,963,738 + -0.2 1,963,750 - -0.7 1,963,765 + -2.0 1,963,765 + -1.2 1,963,773 - -1.0 1,963,773 - +0.8 1,963,788 - -1.9 1,963,808 - Synpcc7942_1890 0.12 +0.9 1,963,820 - Synpcc7942_1890 0.14 -0.4 1,963,836 - Synpcc7942_1890 0.17 -0.0 1,963,858 - Synpcc7942_1890 0.22 -0.2 1,963,868 + Synpcc7942_1890 0.24 -1.6 1,963,876 + Synpcc7942_1890 0.25 -0.6 1,963,876 - Synpcc7942_1890 0.25 -0.5 1,963,876 - Synpcc7942_1890 0.25 +0.2 1,963,877 - Synpcc7942_1890 0.25 +0.7 1,963,877 - Synpcc7942_1890 0.25 -0.6 1,963,879 - Synpcc7942_1890 0.26 -0.4 1,963,882 + Synpcc7942_1890 0.26 -0.3 1,963,884 - Synpcc7942_1890 0.27 -2.6 1,963,909 - Synpcc7942_1890 0.32 +0.6 1,963,936 + Synpcc7942_1890 0.37 -0.3 1,963,937 + Synpcc7942_1890 0.37 -1.3 1,963,937 + Synpcc7942_1890 0.37 +1.4 1,963,945 - Synpcc7942_1890 0.39 +0.5 1,963,945 - Synpcc7942_1890 0.39 +0.9 1,963,949 + Synpcc7942_1890 0.40 -1.7 1,963,949 + Synpcc7942_1890 0.40 -0.3 1,963,957 - Synpcc7942_1890 0.41 -2.6 1,963,958 + Synpcc7942_1890 0.41 -0.3 1,963,979 - Synpcc7942_1890 0.46 -0.2 1,963,984 - Synpcc7942_1890 0.47 -0.8 1,963,984 - Synpcc7942_1890 0.47 -0.4 1,964,008 - Synpcc7942_1890 0.51 +4.5 1,964,013 - Synpcc7942_1890 0.52 -1.6 1,964,031 + Synpcc7942_1890 0.56 +0.4 1,964,043 - Synpcc7942_1890 0.58 +1.2 1,964,046 + Synpcc7942_1890 0.59 -0.6 1,964,067 + Synpcc7942_1890 0.63 +0.1 1,964,071 + Synpcc7942_1890 0.64 +1.1 1,964,071 + Synpcc7942_1890 0.64 -0.8 1,964,076 + -0.8 1,964,076 + Synpcc7942_1890 0.65 +1.2 1,964,076 + Synpcc7942_1890 0.65 -0.5 1,964,092 + Synpcc7942_1890 0.68 +0.3 1,964,100 - Synpcc7942_1890 0.69 -1.3 1,964,110 + Synpcc7942_1890 0.71 -0.2 1,964,110 + Synpcc7942_1890 0.71 -0.0 1,964,118 - Synpcc7942_1890 0.73 +1.0 1,964,118 - Synpcc7942_1890 0.73 -0.0 1,964,120 - Synpcc7942_1890 0.73 +0.5 1,964,184 + Synpcc7942_1890 0.86 -0.2 1,964,204 - -0.7 1,964,209 - +0.2 1,964,210 - -0.1 1,964,210 - -0.3 1,964,213 + -0.2 1,964,215 - +0.4 1,964,237 - -2.2 1,964,243 - -0.6 1,964,301 + +1.4 1,964,301 + +2.0 1,964,331 + -0.8 1,964,366 + -0.9 1,964,383 - +0.2 1,964,513 + labA Synpcc7942_1891 0.18 -1.0 1,964,546 + labA Synpcc7942_1891 0.24 -0.3 1,964,546 + labA Synpcc7942_1891 0.24 -0.8 1,964,554 - labA Synpcc7942_1891 0.25 -0.6 1,964,554 - labA Synpcc7942_1891 0.25 -0.8 1,964,620 - labA Synpcc7942_1891 0.37 +0.4 1,964,629 - labA Synpcc7942_1891 0.39 -0.8 1,964,674 - labA Synpcc7942_1891 0.47 +0.2 1,964,762 + labA Synpcc7942_1891 0.62 +0.4 1,964,929 + -0.1 1,964,937 - -0.2 1,964,937 - -0.6 1,964,966 + -0.6 1,964,974 - +0.2 1,964,981 - +0.6 1,964,989 - +0.1 1,965,008 + +0.1 1,965,027 + -0.3 1,965,032 - -0.7 1,965,056 + Synpcc7942_1892 0.11 +1.1 1,965,064 - +1.0 1,965,087 + Synpcc7942_1892 0.15 -0.3 1,965,095 - Synpcc7942_1892 0.16 -0.4 1,965,097 - Synpcc7942_1892 0.16 -0.7 1,965,121 - Synpcc7942_1892 0.19 -0.8 1,965,128 - Synpcc7942_1892 0.20 -2.1 1,965,128 - Synpcc7942_1892 0.20 +1.5 1,965,128 - Synpcc7942_1892 0.20 -0.9 1,965,229 + Synpcc7942_1892 0.32 +0.3 1,965,231 - Synpcc7942_1892 0.32 -0.0 1,965,269 + Synpcc7942_1892 0.37 +0.8 1,965,282 - Synpcc7942_1892 0.39 -0.7 1,965,306 + Synpcc7942_1892 0.42 -1.1 1,965,306 + Synpcc7942_1892 0.42 -2.5 1,965,316 - Synpcc7942_1892 0.43 +0.9 1,965,316 - Synpcc7942_1892 0.43 -1.0 1,965,336 + Synpcc7942_1892 0.45 -0.2 1,965,337 + Synpcc7942_1892 0.45 -1.1 1,965,337 + Synpcc7942_1892 0.45 -0.2 1,965,344 - Synpcc7942_1892 0.46 -1.0 1,965,344 - Synpcc7942_1892 0.46 -0.1 1,965,345 - Synpcc7942_1892 0.46 +0.5 1,965,345 - Synpcc7942_1892 0.46 +0.8 1,965,345 - Synpcc7942_1892 0.46 -1.9 1,965,345 - Synpcc7942_1892 0.46 -0.5 1,965,352 + Synpcc7942_1892 0.47 +0.8 1,965,355 - Synpcc7942_1892 0.48 -0.2 1,965,446 + Synpcc7942_1892 0.59 +0.7 1,965,452 + Synpcc7942_1892 0.60 +0.2 1,965,460 - Synpcc7942_1892 0.61 -1.0 1,965,498 - Synpcc7942_1892 0.65 +0.0 1,965,498 - Synpcc7942_1892 0.65 -0.2 1,965,513 + Synpcc7942_1892 0.67 +0.2 1,965,521 + Synpcc7942_1892 0.68 +0.0 1,965,542 - Synpcc7942_1892 0.71 +1.0 1,965,542 - Synpcc7942_1892 0.71 -0.5 1,965,600 - Synpcc7942_1892 0.78 -0.4 1,965,634 - Synpcc7942_1892 0.82 +0.1 1,965,691 + Synpcc7942_1892 0.89 +1.0 1,965,750 - -0.0 1,965,757 + +0.8 1,965,790 - -2.0 1,965,813 - +0.3 1,965,876 - natA Synpcc7942_1893 0.16 +0.7 1,965,882 + natA Synpcc7942_1893 0.16 -0.9 1,965,894 - natA Synpcc7942_1893 0.18 +0.7 1,965,909 + natA Synpcc7942_1893 0.20 -1.3 1,965,909 + natA Synpcc7942_1893 0.20 +0.7 1,965,909 + natA Synpcc7942_1893 0.20 +0.6 1,965,926 + natA Synpcc7942_1893 0.22 +1.4 1,965,963 + natA Synpcc7942_1893 0.27 -0.7 1,965,963 + natA Synpcc7942_1893 0.27 -0.3 1,965,963 + natA Synpcc7942_1893 0.27 -0.3 1,965,963 + natA Synpcc7942_1893 0.27 +2.3 1,965,963 + natA Synpcc7942_1893 0.27 +0.1 1,965,963 + natA Synpcc7942_1893 0.27 -1.9 1,965,963 + natA Synpcc7942_1893 0.27 -0.0 1,965,971 - natA Synpcc7942_1893 0.28 +0.4 1,965,971 - natA Synpcc7942_1893 0.28 -0.2 1,965,971 - natA Synpcc7942_1893 0.28 +1.3 1,965,971 - natA Synpcc7942_1893 0.28 +0.1 1,965,971 - natA Synpcc7942_1893 0.28 +0.4 1,965,971 - natA Synpcc7942_1893 0.28 +0.5 1,965,971 - natA Synpcc7942_1893 0.28 -0.6 1,965,971 - natA Synpcc7942_1893 0.28 +0.1 1,965,971 - natA Synpcc7942_1893 0.28 +1.1 1,965,971 - natA Synpcc7942_1893 0.28 +0.7
Or see this region's nucleotide sequence