Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbpA and cysT are separated by 74 nucleotides cysT and orf81 are separated by 23 nucleotides orf81 and cysR are separated by 27 nucleotides cysR and cysW are separated by 45 nucleotides
Synpcc7942_1681: sbpA - Thiosulphate-binding protein, at 1,749,076 to 1,750,128
sbpA
Synpcc7942_1682: cysT - Sulphate transport system permease protein 2, at 1,750,203 to 1,751,039
cysT
Synpcc7942_1683: orf81 - hypothetical protein, at 1,751,063 to 1,751,308
orf81
Synpcc7942_1684: cysR - putative transcriptional regulator, Crp/Fnr family, at 1,751,336 to 1,751,956
cysR
Synpcc7942_1685: cysW - Sulphate transport system permease protein 2, at 1,752,002 to 1,752,862
cysW
Position (kb) 1750
1751
1752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1749.211 kb on + strand, within sbpA at 1749.221 kb on - strand, within sbpA at 1749.235 kb on - strand, within sbpA at 1749.354 kb on - strand, within sbpA at 1749.427 kb on - strand, within sbpA at 1749.481 kb on - strand, within sbpA at 1749.522 kb on + strand, within sbpA at 1749.532 kb on + strand, within sbpA at 1749.550 kb on - strand, within sbpA at 1749.610 kb on + strand, within sbpA at 1749.616 kb on - strand, within sbpA at 1749.618 kb on - strand, within sbpA at 1749.628 kb on - strand, within sbpA at 1749.673 kb on - strand, within sbpA at 1749.683 kb on - strand, within sbpA at 1749.693 kb on - strand, within sbpA at 1749.786 kb on + strand, within sbpA at 1749.835 kb on + strand, within sbpA at 1749.850 kb on - strand, within sbpA at 1749.879 kb on - strand, within sbpA at 1749.879 kb on - strand, within sbpA at 1749.884 kb on + strand, within sbpA at 1749.902 kb on + strand, within sbpA at 1749.903 kb on - strand, within sbpA at 1749.912 kb on + strand, within sbpA at 1749.933 kb on - strand, within sbpA at 1749.967 kb on + strand, within sbpA at 1749.975 kb on - strand, within sbpA at 1749.980 kb on - strand, within sbpA at 1750.012 kb on - strand, within sbpA at 1750.091 kb on + strand at 1750.132 kb on - strand at 1750.147 kb on + strand at 1750.172 kb on + strand at 1750.319 kb on - strand, within cysT at 1750.469 kb on - strand, within cysT at 1750.469 kb on - strand, within cysT at 1750.469 kb on - strand, within cysT at 1750.502 kb on - strand, within cysT at 1750.517 kb on + strand, within cysT at 1750.525 kb on - strand, within cysT at 1750.525 kb on - strand, within cysT at 1750.553 kb on - strand, within cysT at 1750.553 kb on - strand, within cysT at 1750.553 kb on - strand, within cysT at 1750.563 kb on - strand, within cysT at 1750.571 kb on - strand, within cysT at 1750.571 kb on - strand, within cysT at 1750.582 kb on + strand, within cysT at 1750.586 kb on - strand, within cysT at 1750.600 kb on - strand, within cysT at 1750.620 kb on + strand, within cysT at 1750.658 kb on + strand at 1750.663 kb on - strand, within cysT at 1750.677 kb on - strand, within cysT at 1750.739 kb on + strand, within cysT at 1750.744 kb on + strand, within cysT at 1750.744 kb on + strand, within cysT at 1750.747 kb on - strand, within cysT at 1750.810 kb on + strand, within cysT at 1750.815 kb on + strand at 1750.818 kb on - strand, within cysT at 1750.854 kb on + strand, within cysT at 1750.918 kb on + strand, within cysT at 1750.926 kb on + strand, within cysT at 1750.926 kb on - strand, within cysT at 1750.926 kb on - strand, within cysT at 1750.928 kb on + strand, within cysT at 1750.934 kb on - strand, within cysT at 1750.934 kb on - strand, within cysT at 1751.051 kb on - strand at 1751.053 kb on + strand at 1751.061 kb on - strand at 1751.129 kb on - strand, within orf81 at 1751.192 kb on + strand, within orf81 at 1751.202 kb on + strand, within orf81 at 1751.221 kb on - strand, within orf81 at 1751.228 kb on + strand, within orf81 at 1751.234 kb on - strand, within orf81 at 1751.234 kb on - strand, within orf81 at 1751.236 kb on + strand, within orf81 at 1751.244 kb on - strand, within orf81 at 1751.254 kb on - strand, within orf81 at 1751.263 kb on - strand, within orf81 at 1751.271 kb on + strand, within orf81 at 1751.278 kb on + strand, within orf81 at 1751.279 kb on - strand, within orf81 at 1751.302 kb on + strand at 1751.333 kb on - strand at 1751.373 kb on + strand at 1751.397 kb on + strand at 1751.401 kb on - strand, within cysR at 1751.426 kb on + strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.434 kb on - strand, within cysR at 1751.435 kb on + strand, within cysR at 1751.436 kb on + strand, within cysR at 1751.436 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.476 kb on + strand, within cysR at 1751.478 kb on + strand, within cysR at 1751.478 kb on + strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.498 kb on + strand, within cysR at 1751.511 kb on + strand, within cysR at 1751.511 kb on + strand, within cysR at 1751.519 kb on - strand at 1751.519 kb on - strand, within cysR at 1751.519 kb on - strand, within cysR at 1751.549 kb on + strand, within cysR at 1751.554 kb on + strand, within cysR at 1751.557 kb on - strand, within cysR at 1751.621 kb on + strand, within cysR at 1751.652 kb on + strand, within cysR at 1751.662 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.674 kb on + strand, within cysR at 1751.690 kb on - strand, within cysR at 1751.743 kb on - strand at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.772 kb on + strand, within cysR at 1751.773 kb on + strand, within cysR at 1751.773 kb on - strand, within cysR at 1751.780 kb on - strand, within cysR at 1751.800 kb on - strand, within cysR at 1751.800 kb on - strand, within cysR at 1751.813 kb on + strand, within cysR at 1751.825 kb on + strand, within cysR at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.929 kb on + strand at 1751.944 kb on + strand at 1751.944 kb on + strand at 1751.951 kb on + strand at 1751.959 kb on - strand at 1751.959 kb on - strand at 1751.967 kb on + strand at 1751.975 kb on - strand at 1751.975 kb on - strand at 1751.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,749,211 + sbpA Synpcc7942_1681 0.13 -2.1 1,749,221 - sbpA Synpcc7942_1681 0.14 -0.5 1,749,235 - sbpA Synpcc7942_1681 0.15 -0.5 1,749,354 - sbpA Synpcc7942_1681 0.26 -1.4 1,749,427 - sbpA Synpcc7942_1681 0.33 -3.9 1,749,481 - sbpA Synpcc7942_1681 0.38 -0.4 1,749,522 + sbpA Synpcc7942_1681 0.42 -0.1 1,749,532 + sbpA Synpcc7942_1681 0.43 -1.8 1,749,550 - sbpA Synpcc7942_1681 0.45 +2.0 1,749,610 + sbpA Synpcc7942_1681 0.51 -0.6 1,749,616 - sbpA Synpcc7942_1681 0.51 -0.8 1,749,618 - sbpA Synpcc7942_1681 0.51 -1.6 1,749,628 - sbpA Synpcc7942_1681 0.52 +0.4 1,749,673 - sbpA Synpcc7942_1681 0.57 -0.7 1,749,683 - sbpA Synpcc7942_1681 0.58 -0.6 1,749,693 - sbpA Synpcc7942_1681 0.59 -0.2 1,749,786 + sbpA Synpcc7942_1681 0.67 +0.1 1,749,835 + sbpA Synpcc7942_1681 0.72 -0.9 1,749,850 - sbpA Synpcc7942_1681 0.74 +0.1 1,749,879 - sbpA Synpcc7942_1681 0.76 -0.1 1,749,879 - sbpA Synpcc7942_1681 0.76 +1.0 1,749,884 + sbpA Synpcc7942_1681 0.77 +1.0 1,749,902 + sbpA Synpcc7942_1681 0.78 -1.6 1,749,903 - sbpA Synpcc7942_1681 0.79 -0.7 1,749,912 + sbpA Synpcc7942_1681 0.79 +0.2 1,749,933 - sbpA Synpcc7942_1681 0.81 -0.5 1,749,967 + sbpA Synpcc7942_1681 0.85 -0.0 1,749,975 - sbpA Synpcc7942_1681 0.85 +1.0 1,749,980 - sbpA Synpcc7942_1681 0.86 -1.4 1,750,012 - sbpA Synpcc7942_1681 0.89 -0.6 1,750,091 + -2.5 1,750,132 - +0.7 1,750,147 + -1.5 1,750,172 + -0.7 1,750,319 - cysT Synpcc7942_1682 0.14 -1.2 1,750,469 - cysT Synpcc7942_1682 0.32 -1.7 1,750,469 - cysT Synpcc7942_1682 0.32 -2.4 1,750,469 - cysT Synpcc7942_1682 0.32 -1.9 1,750,502 - cysT Synpcc7942_1682 0.36 -2.4 1,750,517 + cysT Synpcc7942_1682 0.38 +0.5 1,750,525 - cysT Synpcc7942_1682 0.38 -1.6 1,750,525 - cysT Synpcc7942_1682 0.38 -1.0 1,750,553 - cysT Synpcc7942_1682 0.42 -1.8 1,750,553 - cysT Synpcc7942_1682 0.42 -2.6 1,750,553 - cysT Synpcc7942_1682 0.42 -0.5 1,750,563 - cysT Synpcc7942_1682 0.43 +0.2 1,750,571 - cysT Synpcc7942_1682 0.44 -3.3 1,750,571 - cysT Synpcc7942_1682 0.44 -1.0 1,750,582 + cysT Synpcc7942_1682 0.45 +0.4 1,750,586 - cysT Synpcc7942_1682 0.46 -2.3 1,750,600 - cysT Synpcc7942_1682 0.47 -1.1 1,750,620 + cysT Synpcc7942_1682 0.50 -2.6 1,750,658 + -1.4 1,750,663 - cysT Synpcc7942_1682 0.55 -2.1 1,750,677 - cysT Synpcc7942_1682 0.57 -0.4 1,750,739 + cysT Synpcc7942_1682 0.64 -0.9 1,750,744 + cysT Synpcc7942_1682 0.65 +2.0 1,750,744 + cysT Synpcc7942_1682 0.65 -1.5 1,750,747 - cysT Synpcc7942_1682 0.65 -2.4 1,750,810 + cysT Synpcc7942_1682 0.73 -1.4 1,750,815 + -0.0 1,750,818 - cysT Synpcc7942_1682 0.73 -1.0 1,750,854 + cysT Synpcc7942_1682 0.78 -1.8 1,750,918 + cysT Synpcc7942_1682 0.85 -0.6 1,750,926 + cysT Synpcc7942_1682 0.86 -1.8 1,750,926 - cysT Synpcc7942_1682 0.86 -3.8 1,750,926 - cysT Synpcc7942_1682 0.86 -0.0 1,750,928 + cysT Synpcc7942_1682 0.87 -2.5 1,750,934 - cysT Synpcc7942_1682 0.87 -0.8 1,750,934 - cysT Synpcc7942_1682 0.87 -0.0 1,751,051 - -0.4 1,751,053 + -0.2 1,751,061 - -0.6 1,751,129 - orf81 Synpcc7942_1683 0.27 +0.4 1,751,192 + orf81 Synpcc7942_1683 0.52 +0.3 1,751,202 + orf81 Synpcc7942_1683 0.57 +0.1 1,751,221 - orf81 Synpcc7942_1683 0.64 +1.0 1,751,228 + orf81 Synpcc7942_1683 0.67 -0.0 1,751,234 - orf81 Synpcc7942_1683 0.70 +0.5 1,751,234 - orf81 Synpcc7942_1683 0.70 -1.5 1,751,236 + orf81 Synpcc7942_1683 0.70 +2.2 1,751,244 - orf81 Synpcc7942_1683 0.74 +0.9 1,751,254 - orf81 Synpcc7942_1683 0.78 +0.2 1,751,263 - orf81 Synpcc7942_1683 0.81 -0.3 1,751,271 + orf81 Synpcc7942_1683 0.85 -0.0 1,751,278 + orf81 Synpcc7942_1683 0.87 -0.6 1,751,279 - orf81 Synpcc7942_1683 0.88 +2.3 1,751,302 + +0.1 1,751,333 - -1.6 1,751,373 + +0.1 1,751,397 + -0.0 1,751,401 - cysR Synpcc7942_1684 0.10 -1.0 1,751,426 + cysR Synpcc7942_1684 0.14 -0.8 1,751,429 - cysR Synpcc7942_1684 0.15 +0.6 1,751,429 - cysR Synpcc7942_1684 0.15 +0.3 1,751,429 - cysR Synpcc7942_1684 0.15 +1.5 1,751,434 - cysR Synpcc7942_1684 0.16 +0.7 1,751,435 + cysR Synpcc7942_1684 0.16 +0.4 1,751,436 + cysR Synpcc7942_1684 0.16 +0.1 1,751,436 + cysR Synpcc7942_1684 0.16 +0.9 1,751,465 + cysR Synpcc7942_1684 0.21 +1.1 1,751,465 + cysR Synpcc7942_1684 0.21 +0.5 1,751,465 + cysR Synpcc7942_1684 0.21 -0.2 1,751,465 + cysR Synpcc7942_1684 0.21 -0.0 1,751,476 + cysR Synpcc7942_1684 0.23 +0.6 1,751,478 + cysR Synpcc7942_1684 0.23 -0.4 1,751,478 + cysR Synpcc7942_1684 0.23 -0.0 1,751,486 - cysR Synpcc7942_1684 0.24 +1.2 1,751,486 - cysR Synpcc7942_1684 0.24 -1.8 1,751,486 - cysR Synpcc7942_1684 0.24 -0.2 1,751,486 - cysR Synpcc7942_1684 0.24 +1.8 1,751,498 + cysR Synpcc7942_1684 0.26 -0.8 1,751,511 + cysR Synpcc7942_1684 0.28 -1.3 1,751,511 + cysR Synpcc7942_1684 0.28 +0.7 1,751,519 - +2.6 1,751,519 - cysR Synpcc7942_1684 0.29 -0.4 1,751,519 - cysR Synpcc7942_1684 0.29 +0.6 1,751,549 + cysR Synpcc7942_1684 0.34 -1.2 1,751,554 + cysR Synpcc7942_1684 0.35 +0.1 1,751,557 - cysR Synpcc7942_1684 0.36 +0.7 1,751,621 + cysR Synpcc7942_1684 0.46 +0.4 1,751,652 + cysR Synpcc7942_1684 0.51 -0.2 1,751,662 - cysR Synpcc7942_1684 0.52 -0.6 1,751,664 - cysR Synpcc7942_1684 0.53 +0.3 1,751,664 - cysR Synpcc7942_1684 0.53 +0.2 1,751,664 - cysR Synpcc7942_1684 0.53 +0.2 1,751,674 + cysR Synpcc7942_1684 0.54 -0.9 1,751,690 - cysR Synpcc7942_1684 0.57 -0.6 1,751,743 - -0.4 1,751,760 - cysR Synpcc7942_1684 0.68 +0.5 1,751,760 - cysR Synpcc7942_1684 0.68 +0.4 1,751,760 - cysR Synpcc7942_1684 0.68 -0.4 1,751,760 - cysR Synpcc7942_1684 0.68 +0.3 1,751,760 - cysR Synpcc7942_1684 0.68 -0.2 1,751,772 + cysR Synpcc7942_1684 0.70 +1.6 1,751,773 + cysR Synpcc7942_1684 0.70 +0.2 1,751,773 - cysR Synpcc7942_1684 0.70 -0.3 1,751,780 - cysR Synpcc7942_1684 0.71 -0.2 1,751,800 - cysR Synpcc7942_1684 0.75 +0.4 1,751,800 - cysR Synpcc7942_1684 0.75 -0.8 1,751,813 + cysR Synpcc7942_1684 0.77 -0.5 1,751,825 + cysR Synpcc7942_1684 0.79 -0.2 1,751,924 - -1.2 1,751,924 - -0.3 1,751,924 - +0.8 1,751,924 - -0.3 1,751,929 + +0.7 1,751,944 + -0.6 1,751,944 + -1.8 1,751,951 + -0.1 1,751,959 - -0.2 1,751,959 - -0.6 1,751,967 + -0.2 1,751,975 - -1.6 1,751,975 - +0.2 1,751,982 - -0.2
Or see this region's nucleotide sequence