Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1405

Experiment: BG11

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_1403 and Synpcc7942_1404 are separated by 25 nucleotidesSynpcc7942_1404 and Synpcc7942_1405 are separated by 175 nucleotidesSynpcc7942_1405 and futC are separated by 15 nucleotides Synpcc7942_1403: Synpcc7942_1403 - Hydroxyacylglutathione hydrolase, at 1,454,593 to 1,455,369 _1403 Synpcc7942_1404: Synpcc7942_1404 - two component transcriptional regulator, winged helix family, at 1,455,395 to 1,456,084 _1404 Synpcc7942_1405: Synpcc7942_1405 - hypothetical protein, at 1,456,260 to 1,456,787 _1405 Synpcc7942_1406: futC - ATPase, at 1,456,803 to 1,457,909 futC Position (kb) 1456 1457Strain fitness (log2 ratio) -3 -2 -1 0 1at 1455.272 kb on + strand, within Synpcc7942_1403at 1455.282 kb on + strand, within Synpcc7942_1403at 1455.289 kb on - strand, within Synpcc7942_1403at 1455.304 kb on - strandat 1455.306 kb on + strandat 1455.309 kb on - strandat 1455.314 kb on - strandat 1455.345 kb on - strandat 1455.364 kb on - strandat 1456.085 kb on + strandat 1456.095 kb on - strandat 1456.106 kb on - strandat 1456.108 kb on + strandat 1456.111 kb on + strandat 1456.119 kb on - strandat 1456.119 kb on - strandat 1456.131 kb on + strandat 1456.152 kb on + strandat 1456.162 kb on + strandat 1456.162 kb on + strandat 1456.170 kb on - strandat 1456.190 kb on + strandat 1456.203 kb on - strandat 1456.205 kb on + strandat 1456.212 kb on + strandat 1456.213 kb on - strandat 1456.213 kb on - strandat 1456.217 kb on + strandat 1456.220 kb on - strandat 1456.220 kb on - strandat 1456.225 kb on + strandat 1456.283 kb on - strandat 1456.283 kb on - strandat 1456.301 kb on - strandat 1456.316 kb on - strand, within Synpcc7942_1405at 1456.316 kb on - strand, within Synpcc7942_1405at 1456.316 kb on - strand, within Synpcc7942_1405at 1456.337 kb on - strand, within Synpcc7942_1405at 1456.370 kb on + strand, within Synpcc7942_1405at 1456.378 kb on - strand, within Synpcc7942_1405at 1456.378 kb on - strand, within Synpcc7942_1405at 1456.378 kb on - strand, within Synpcc7942_1405at 1456.378 kb on - strand, within Synpcc7942_1405at 1456.379 kb on + strand, within Synpcc7942_1405at 1456.384 kb on + strand, within Synpcc7942_1405at 1456.384 kb on + strand, within Synpcc7942_1405at 1456.391 kb on + strand, within Synpcc7942_1405at 1456.391 kb on + strand, within Synpcc7942_1405at 1456.438 kb on + strand, within Synpcc7942_1405at 1456.508 kb on + strand, within Synpcc7942_1405at 1456.517 kb on - strand, within Synpcc7942_1405at 1456.554 kb on - strand, within Synpcc7942_1405at 1456.608 kb on + strand, within Synpcc7942_1405at 1456.631 kb on - strand, within Synpcc7942_1405at 1456.636 kb on - strand, within Synpcc7942_1405at 1456.712 kb on + strand, within Synpcc7942_1405at 1456.712 kb on + strand, within Synpcc7942_1405at 1456.772 kb on - strandat 1456.790 kb on - strandat 1456.791 kb on - strandat 1456.797 kb on - strandat 1456.801 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11
remove
1,455,272 + Synpcc7942_1403 0.87 -0.9
1,455,282 + Synpcc7942_1403 0.89 -1.9
1,455,289 - Synpcc7942_1403 0.90 +0.8
1,455,304 - -0.9
1,455,306 + -0.4
1,455,309 - +0.4
1,455,314 - -0.6
1,455,345 - -0.5
1,455,364 - -0.6
1,456,085 + -1.2
1,456,095 - +0.2
1,456,106 - +0.6
1,456,108 + -0.4
1,456,111 + +1.2
1,456,119 - -2.0
1,456,119 - +0.8
1,456,131 + -2.1
1,456,152 + +0.5
1,456,162 + +0.1
1,456,162 + -0.4
1,456,170 - -0.3
1,456,190 + -0.6
1,456,203 - -1.2
1,456,205 + -0.7
1,456,212 + -0.4
1,456,213 - -0.2
1,456,213 - -0.1
1,456,217 + -1.7
1,456,220 - +0.4
1,456,220 - +0.2
1,456,225 + -1.1
1,456,283 - +1.2
1,456,283 - -0.2
1,456,301 - +0.7
1,456,316 - Synpcc7942_1405 0.11 -2.4
1,456,316 - Synpcc7942_1405 0.11 -0.7
1,456,316 - Synpcc7942_1405 0.11 -1.6
1,456,337 - Synpcc7942_1405 0.15 -0.8
1,456,370 + Synpcc7942_1405 0.21 -2.6
1,456,378 - Synpcc7942_1405 0.22 -0.6
1,456,378 - Synpcc7942_1405 0.22 -1.3
1,456,378 - Synpcc7942_1405 0.22 -1.8
1,456,378 - Synpcc7942_1405 0.22 -1.7
1,456,379 + Synpcc7942_1405 0.23 -2.3
1,456,384 + Synpcc7942_1405 0.23 -1.4
1,456,384 + Synpcc7942_1405 0.23 -1.4
1,456,391 + Synpcc7942_1405 0.25 -0.8
1,456,391 + Synpcc7942_1405 0.25 -1.2
1,456,438 + Synpcc7942_1405 0.34 -2.2
1,456,508 + Synpcc7942_1405 0.47 -0.8
1,456,517 - Synpcc7942_1405 0.49 -2.6
1,456,554 - Synpcc7942_1405 0.56 -0.4
1,456,608 + Synpcc7942_1405 0.66 -0.2
1,456,631 - Synpcc7942_1405 0.70 -1.2
1,456,636 - Synpcc7942_1405 0.71 -3.7
1,456,712 + Synpcc7942_1405 0.86 -1.7
1,456,712 + Synpcc7942_1405 0.86 -1.1
1,456,772 - +0.2
1,456,790 - +0.9
1,456,791 - -0.6
1,456,797 - +0.4
1,456,801 + +0.2

Or see this region's nucleotide sequence