Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1299 and Synpcc7942_1300 are separated by 238 nucleotides Synpcc7942_1300 and recQ are separated by 15 nucleotides
Synpcc7942_1299: Synpcc7942_1299 - hypothetical protein, at 1,326,892 to 1,327,854
_1299
Synpcc7942_1300: Synpcc7942_1300 - hypothetical protein, at 1,328,093 to 1,328,662
_1300
Synpcc7942_1301: recQ - ATP-dependent DNA helicase RecQ, at 1,328,678 to 1,330,141
recQ
Position (kb) 1328
1329 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1327.105 kb on + strand, within Synpcc7942_1299 at 1327.122 kb on + strand, within Synpcc7942_1299 at 1327.122 kb on + strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.155 kb on - strand, within Synpcc7942_1299 at 1327.260 kb on + strand, within Synpcc7942_1299 at 1327.283 kb on + strand, within Synpcc7942_1299 at 1327.325 kb on + strand, within Synpcc7942_1299 at 1327.325 kb on + strand, within Synpcc7942_1299 at 1327.362 kb on - strand, within Synpcc7942_1299 at 1327.407 kb on + strand, within Synpcc7942_1299 at 1327.412 kb on + strand, within Synpcc7942_1299 at 1327.447 kb on + strand, within Synpcc7942_1299 at 1327.455 kb on - strand, within Synpcc7942_1299 at 1327.466 kb on + strand, within Synpcc7942_1299 at 1327.466 kb on + strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.491 kb on + strand, within Synpcc7942_1299 at 1327.497 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on + strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.509 kb on - strand, within Synpcc7942_1299 at 1327.511 kb on - strand, within Synpcc7942_1299 at 1327.543 kb on + strand, within Synpcc7942_1299 at 1327.591 kb on + strand, within Synpcc7942_1299 at 1327.599 kb on - strand, within Synpcc7942_1299 at 1327.601 kb on + strand, within Synpcc7942_1299 at 1327.682 kb on - strand, within Synpcc7942_1299 at 1327.684 kb on + strand, within Synpcc7942_1299 at 1327.692 kb on - strand, within Synpcc7942_1299 at 1327.826 kb on + strand at 1327.834 kb on - strand at 1327.834 kb on - strand at 1327.842 kb on - strand at 1327.844 kb on + strand at 1328.006 kb on + strand at 1328.006 kb on + strand at 1328.014 kb on - strand at 1328.016 kb on + strand at 1328.086 kb on + strand at 1328.094 kb on - strand at 1328.102 kb on + strand at 1328.224 kb on + strand, within Synpcc7942_1300 at 1328.232 kb on - strand, within Synpcc7942_1300 at 1328.265 kb on + strand, within Synpcc7942_1300 at 1328.310 kb on + strand, within Synpcc7942_1300 at 1328.346 kb on - strand, within Synpcc7942_1300 at 1328.413 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.423 kb on - strand, within Synpcc7942_1300 at 1328.478 kb on - strand, within Synpcc7942_1300 at 1328.518 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.581 kb on - strand, within Synpcc7942_1300 at 1328.588 kb on + strand, within Synpcc7942_1300 at 1328.626 kb on + strand at 1328.651 kb on - strand at 1328.671 kb on - strand at 1328.671 kb on - strand at 1328.673 kb on + strand at 1328.678 kb on - strand at 1328.683 kb on - strand at 1328.683 kb on - strand at 1328.693 kb on + strand at 1328.699 kb on - strand at 1328.731 kb on - strand at 1328.745 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.765 kb on + strand at 1328.772 kb on - strand at 1328.772 kb on - strand at 1328.781 kb on + strand at 1328.792 kb on + strand at 1328.797 kb on + strand at 1328.804 kb on + strand at 1328.805 kb on - strand at 1328.825 kb on + strand, within recQ at 1328.827 kb on - strand at 1328.874 kb on + strand, within recQ at 1328.874 kb on + strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.896 kb on - strand, within recQ at 1328.903 kb on + strand, within recQ at 1328.911 kb on - strand, within recQ at 1328.965 kb on - strand, within recQ at 1329.008 kb on - strand, within recQ at 1329.029 kb on + strand, within recQ at 1329.055 kb on + strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.068 kb on + strand, within recQ at 1329.074 kb on + strand, within recQ at 1329.101 kb on + strand, within recQ at 1329.148 kb on + strand, within recQ at 1329.149 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.161 kb on + strand, within recQ at 1329.166 kb on - strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.226 kb on - strand, within recQ at 1329.240 kb on - strand, within recQ at 1329.264 kb on - strand, within recQ at 1329.285 kb on - strand, within recQ at 1329.294 kb on - strand, within recQ at 1329.308 kb on - strand, within recQ at 1329.352 kb on - strand, within recQ at 1329.360 kb on - strand, within recQ at 1329.386 kb on - strand at 1329.390 kb on - strand, within recQ at 1329.399 kb on + strand, within recQ at 1329.406 kb on - strand, within recQ at 1329.418 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.454 kb on - strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.482 kb on - strand, within recQ at 1329.545 kb on - strand, within recQ at 1329.587 kb on + strand, within recQ at 1329.602 kb on + strand at 1329.602 kb on + strand, within recQ at 1329.602 kb on - strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.614 kb on + strand, within recQ at 1329.632 kb on + strand, within recQ at 1329.634 kb on - strand, within recQ at 1329.651 kb on + strand, within recQ
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,327,105 + Synpcc7942_1299 0.22 -1.0 1,327,122 + Synpcc7942_1299 0.24 -0.0 1,327,122 + Synpcc7942_1299 0.24 +0.6 1,327,130 - Synpcc7942_1299 0.25 -1.1 1,327,130 - Synpcc7942_1299 0.25 -1.0 1,327,130 - Synpcc7942_1299 0.25 +0.2 1,327,130 - Synpcc7942_1299 0.25 +0.7 1,327,147 + Synpcc7942_1299 0.26 +0.2 1,327,147 + Synpcc7942_1299 0.26 +0.2 1,327,147 + Synpcc7942_1299 0.26 +0.2 1,327,155 - Synpcc7942_1299 0.27 +0.6 1,327,260 + Synpcc7942_1299 0.38 -0.3 1,327,283 + Synpcc7942_1299 0.41 +0.0 1,327,325 + Synpcc7942_1299 0.45 +0.1 1,327,325 + Synpcc7942_1299 0.45 -0.1 1,327,362 - Synpcc7942_1299 0.49 -0.1 1,327,407 + Synpcc7942_1299 0.53 -0.9 1,327,412 + Synpcc7942_1299 0.54 +0.5 1,327,447 + Synpcc7942_1299 0.58 +0.4 1,327,455 - Synpcc7942_1299 0.58 -0.6 1,327,466 + Synpcc7942_1299 0.60 +0.3 1,327,466 + Synpcc7942_1299 0.60 -0.4 1,327,474 - Synpcc7942_1299 0.60 -0.1 1,327,474 - Synpcc7942_1299 0.60 +0.5 1,327,474 - Synpcc7942_1299 0.60 +1.9 1,327,474 - Synpcc7942_1299 0.60 +0.1 1,327,491 + Synpcc7942_1299 0.62 -0.0 1,327,497 - Synpcc7942_1299 0.63 +1.4 1,327,501 + Synpcc7942_1299 0.63 -0.2 1,327,501 - Synpcc7942_1299 0.63 +0.2 1,327,501 - Synpcc7942_1299 0.63 -2.1 1,327,501 - Synpcc7942_1299 0.63 +0.1 1,327,509 - Synpcc7942_1299 0.64 +1.9 1,327,511 - Synpcc7942_1299 0.64 +0.2 1,327,543 + Synpcc7942_1299 0.68 -0.8 1,327,591 + Synpcc7942_1299 0.73 -0.1 1,327,599 - Synpcc7942_1299 0.73 +0.6 1,327,601 + Synpcc7942_1299 0.74 -1.4 1,327,682 - Synpcc7942_1299 0.82 -0.9 1,327,684 + Synpcc7942_1299 0.82 -0.2 1,327,692 - Synpcc7942_1299 0.83 -0.8 1,327,826 + -1.6 1,327,834 - -1.3 1,327,834 - +0.7 1,327,842 - -0.8 1,327,844 + +0.1 1,328,006 + +1.5 1,328,006 + +0.5 1,328,014 - -0.8 1,328,016 + -1.5 1,328,086 + +0.2 1,328,094 - +0.6 1,328,102 + +0.2 1,328,224 + Synpcc7942_1300 0.23 -1.2 1,328,232 - Synpcc7942_1300 0.24 +0.1 1,328,265 + Synpcc7942_1300 0.30 -1.2 1,328,310 + Synpcc7942_1300 0.38 -1.2 1,328,346 - Synpcc7942_1300 0.44 -0.9 1,328,413 + Synpcc7942_1300 0.56 +0.1 1,328,415 + Synpcc7942_1300 0.56 -0.1 1,328,415 + Synpcc7942_1300 0.56 -0.4 1,328,415 + Synpcc7942_1300 0.56 -1.1 1,328,415 + Synpcc7942_1300 0.56 -1.1 1,328,423 - Synpcc7942_1300 0.58 -1.0 1,328,478 - Synpcc7942_1300 0.68 -0.6 1,328,518 + Synpcc7942_1300 0.75 +0.5 1,328,563 + Synpcc7942_1300 0.82 -0.1 1,328,563 + Synpcc7942_1300 0.82 -1.3 1,328,563 + Synpcc7942_1300 0.82 -0.1 1,328,571 - Synpcc7942_1300 0.84 +0.4 1,328,571 - Synpcc7942_1300 0.84 -1.9 1,328,581 - Synpcc7942_1300 0.86 -0.6 1,328,588 + Synpcc7942_1300 0.87 +2.5 1,328,626 + +0.1 1,328,651 - +0.1 1,328,671 - -0.2 1,328,671 - -1.1 1,328,673 + -1.6 1,328,678 - +0.4 1,328,683 - -0.5 1,328,683 - +0.0 1,328,693 + -0.9 1,328,699 - -0.4 1,328,731 - -0.2 1,328,745 + -0.8 1,328,764 + -0.1 1,328,764 + +0.9 1,328,764 + -0.2 1,328,765 + +2.9 1,328,772 - -0.2 1,328,772 - -0.6 1,328,781 + -0.2 1,328,792 + +1.1 1,328,797 + -1.2 1,328,804 + -0.6 1,328,805 - +0.2 1,328,825 + recQ Synpcc7942_1301 0.10 -0.7 1,328,827 - -0.1 1,328,874 + recQ Synpcc7942_1301 0.13 -0.6 1,328,874 + recQ Synpcc7942_1301 0.13 +0.9 1,328,882 - recQ Synpcc7942_1301 0.14 -1.0 1,328,882 - recQ Synpcc7942_1301 0.14 +0.7 1,328,896 - recQ Synpcc7942_1301 0.15 +0.1 1,328,903 + recQ Synpcc7942_1301 0.15 +0.9 1,328,911 - recQ Synpcc7942_1301 0.16 +0.7 1,328,965 - recQ Synpcc7942_1301 0.20 +0.7 1,329,008 - recQ Synpcc7942_1301 0.23 -0.4 1,329,029 + recQ Synpcc7942_1301 0.24 +1.4 1,329,055 + recQ Synpcc7942_1301 0.26 -0.0 1,329,063 - recQ Synpcc7942_1301 0.26 -1.3 1,329,063 - recQ Synpcc7942_1301 0.26 +0.4 1,329,063 - recQ Synpcc7942_1301 0.26 -0.8 1,329,063 - recQ Synpcc7942_1301 0.26 +0.1 1,329,068 + recQ Synpcc7942_1301 0.27 -0.3 1,329,074 + recQ Synpcc7942_1301 0.27 +0.7 1,329,101 + recQ Synpcc7942_1301 0.29 -0.5 1,329,148 + recQ Synpcc7942_1301 0.32 -1.8 1,329,149 + recQ Synpcc7942_1301 0.32 -0.8 1,329,158 + recQ Synpcc7942_1301 0.33 -0.1 1,329,158 + recQ Synpcc7942_1301 0.33 -0.6 1,329,161 + recQ Synpcc7942_1301 0.33 -0.3 1,329,166 - recQ Synpcc7942_1301 0.33 +0.3 1,329,218 + recQ Synpcc7942_1301 0.37 +0.5 1,329,218 + recQ Synpcc7942_1301 0.37 +0.1 1,329,218 + recQ Synpcc7942_1301 0.37 +0.3 1,329,226 - recQ Synpcc7942_1301 0.37 +0.7 1,329,240 - recQ Synpcc7942_1301 0.38 -0.1 1,329,264 - recQ Synpcc7942_1301 0.40 -0.4 1,329,285 - recQ Synpcc7942_1301 0.41 +0.4 1,329,294 - recQ Synpcc7942_1301 0.42 -0.6 1,329,308 - recQ Synpcc7942_1301 0.43 -1.1 1,329,352 - recQ Synpcc7942_1301 0.46 +1.5 1,329,360 - recQ Synpcc7942_1301 0.47 -2.7 1,329,386 - +1.9 1,329,390 - recQ Synpcc7942_1301 0.49 -0.5 1,329,399 + recQ Synpcc7942_1301 0.49 -1.0 1,329,406 - recQ Synpcc7942_1301 0.50 -0.1 1,329,418 - recQ Synpcc7942_1301 0.51 +0.2 1,329,445 - recQ Synpcc7942_1301 0.52 -0.4 1,329,445 - recQ Synpcc7942_1301 0.52 +0.1 1,329,446 + recQ Synpcc7942_1301 0.52 -1.3 1,329,446 + recQ Synpcc7942_1301 0.52 -1.1 1,329,454 - recQ Synpcc7942_1301 0.53 +0.3 1,329,481 + recQ Synpcc7942_1301 0.55 -0.5 1,329,481 + recQ Synpcc7942_1301 0.55 -0.9 1,329,481 + recQ Synpcc7942_1301 0.55 -0.1 1,329,482 - recQ Synpcc7942_1301 0.55 +0.5 1,329,545 - recQ Synpcc7942_1301 0.59 -0.7 1,329,587 + recQ Synpcc7942_1301 0.62 +2.2 1,329,602 + -0.1 1,329,602 + recQ Synpcc7942_1301 0.63 -1.0 1,329,602 - recQ Synpcc7942_1301 0.63 -0.2 1,329,604 + recQ Synpcc7942_1301 0.63 +0.2 1,329,604 + recQ Synpcc7942_1301 0.63 -0.4 1,329,612 - recQ Synpcc7942_1301 0.64 -0.2 1,329,612 - recQ Synpcc7942_1301 0.64 -0.3 1,329,612 - recQ Synpcc7942_1301 0.64 -0.2 1,329,614 + recQ Synpcc7942_1301 0.64 -0.5 1,329,632 + recQ Synpcc7942_1301 0.65 +2.2 1,329,634 - recQ Synpcc7942_1301 0.65 +0.4 1,329,651 + recQ Synpcc7942_1301 0.66 -0.3
Or see this region's nucleotide sequence