Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1166 and Synpcc7942_1167 are separated by 10 nucleotides Synpcc7942_1167 and cpmA overlap by 4 nucleotides cpmA and Synpcc7942_1169 overlap by 8 nucleotides
Synpcc7942_1166: Synpcc7942_1166 - hypothetical protein, at 1,199,437 to 1,200,762
_1166
Synpcc7942_1167: Synpcc7942_1167 - hypothetical protein, at 1,200,773 to 1,201,330
_1167
Synpcc7942_1168: cpmA - circadian phase modifier CpmA, at 1,201,327 to 1,202,109
cpmA
Synpcc7942_1169: Synpcc7942_1169 - oligopeptide-binding protein of oligopeptide ABC transporter, at 1,202,102 to 1,203,865
_1169
Position (kb)
1201
1202
1203 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1200.492 kb on - strand, within Synpcc7942_1166 at 1200.507 kb on + strand, within Synpcc7942_1166 at 1200.512 kb on + strand, within Synpcc7942_1166 at 1200.562 kb on + strand, within Synpcc7942_1166 at 1200.568 kb on + strand, within Synpcc7942_1166 at 1200.573 kb on + strand, within Synpcc7942_1166 at 1200.693 kb on + strand at 1200.719 kb on - strand at 1200.719 kb on - strand at 1200.729 kb on - strand at 1200.738 kb on + strand at 1200.759 kb on + strand at 1200.882 kb on + strand, within Synpcc7942_1167 at 1200.882 kb on + strand, within Synpcc7942_1167 at 1200.885 kb on - strand, within Synpcc7942_1167 at 1200.890 kb on - strand, within Synpcc7942_1167 at 1200.890 kb on - strand, within Synpcc7942_1167 at 1200.920 kb on + strand, within Synpcc7942_1167 at 1200.921 kb on + strand, within Synpcc7942_1167 at 1200.933 kb on + strand, within Synpcc7942_1167 at 1200.933 kb on + strand, within Synpcc7942_1167 at 1200.933 kb on + strand, within Synpcc7942_1167 at 1200.933 kb on + strand, within Synpcc7942_1167 at 1200.952 kb on + strand, within Synpcc7942_1167 at 1200.989 kb on + strand, within Synpcc7942_1167 at 1201.002 kb on + strand, within Synpcc7942_1167 at 1201.023 kb on - strand, within Synpcc7942_1167 at 1201.034 kb on + strand, within Synpcc7942_1167 at 1201.035 kb on - strand, within Synpcc7942_1167 at 1201.039 kb on + strand, within Synpcc7942_1167 at 1201.042 kb on - strand, within Synpcc7942_1167 at 1201.042 kb on - strand, within Synpcc7942_1167 at 1201.057 kb on + strand, within Synpcc7942_1167 at 1201.059 kb on + strand, within Synpcc7942_1167 at 1201.067 kb on + strand, within Synpcc7942_1167 at 1201.067 kb on + strand at 1201.075 kb on - strand, within Synpcc7942_1167 at 1201.080 kb on - strand, within Synpcc7942_1167 at 1201.097 kb on + strand, within Synpcc7942_1167 at 1201.138 kb on + strand, within Synpcc7942_1167 at 1201.247 kb on - strand, within Synpcc7942_1167 at 1201.278 kb on - strand at 1201.318 kb on + strand at 1201.325 kb on + strand at 1201.326 kb on - strand at 1201.419 kb on + strand, within cpmA at 1201.541 kb on + strand, within cpmA at 1201.549 kb on - strand, within cpmA at 1201.624 kb on + strand, within cpmA at 1202.031 kb on + strand at 1202.032 kb on + strand at 1202.083 kb on + strand at 1202.083 kb on + strand at 1202.112 kb on + strand at 1202.150 kb on + strand at 1202.156 kb on - strand at 1202.170 kb on - strand at 1202.173 kb on + strand at 1202.181 kb on - strand at 1202.191 kb on - strand at 1202.191 kb on - strand at 1202.191 kb on - strand at 1202.218 kb on + strand at 1202.237 kb on - strand at 1202.469 kb on - strand, within Synpcc7942_1169 at 1202.481 kb on - strand, within Synpcc7942_1169 at 1202.538 kb on - strand, within Synpcc7942_1169 at 1202.538 kb on - strand, within Synpcc7942_1169 at 1202.538 kb on - strand, within Synpcc7942_1169 at 1202.568 kb on + strand, within Synpcc7942_1169 at 1202.568 kb on + strand, within Synpcc7942_1169 at 1202.576 kb on - strand, within Synpcc7942_1169 at 1202.608 kb on + strand, within Synpcc7942_1169 at 1202.625 kb on + strand, within Synpcc7942_1169 at 1202.640 kb on - strand, within Synpcc7942_1169 at 1202.642 kb on + strand, within Synpcc7942_1169 at 1202.650 kb on - strand, within Synpcc7942_1169 at 1202.666 kb on + strand, within Synpcc7942_1169 at 1202.726 kb on + strand, within Synpcc7942_1169 at 1202.726 kb on + strand, within Synpcc7942_1169 at 1202.797 kb on - strand, within Synpcc7942_1169 at 1202.802 kb on - strand, within Synpcc7942_1169 at 1202.802 kb on - strand, within Synpcc7942_1169 at 1202.913 kb on + strand, within Synpcc7942_1169 at 1202.920 kb on - strand, within Synpcc7942_1169 at 1202.968 kb on + strand, within Synpcc7942_1169 at 1202.968 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.979 kb on + strand, within Synpcc7942_1169 at 1202.987 kb on - strand, within Synpcc7942_1169 at 1203.085 kb on + strand, within Synpcc7942_1169
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,200,492 - Synpcc7942_1166 0.80 -0.1 1,200,507 + Synpcc7942_1166 0.81 -0.8 1,200,512 + Synpcc7942_1166 0.81 -0.5 1,200,562 + Synpcc7942_1166 0.85 +1.1 1,200,568 + Synpcc7942_1166 0.85 +0.1 1,200,573 + Synpcc7942_1166 0.86 +0.7 1,200,693 + -0.2 1,200,719 - -0.9 1,200,719 - +0.3 1,200,729 - +0.6 1,200,738 + +1.4 1,200,759 + +0.3 1,200,882 + Synpcc7942_1167 0.20 -0.1 1,200,882 + Synpcc7942_1167 0.20 +0.9 1,200,885 - Synpcc7942_1167 0.20 -0.1 1,200,890 - Synpcc7942_1167 0.21 +0.6 1,200,890 - Synpcc7942_1167 0.21 -0.7 1,200,920 + Synpcc7942_1167 0.26 +0.9 1,200,921 + Synpcc7942_1167 0.27 -0.2 1,200,933 + Synpcc7942_1167 0.29 +0.6 1,200,933 + Synpcc7942_1167 0.29 -0.9 1,200,933 + Synpcc7942_1167 0.29 +0.8 1,200,933 + Synpcc7942_1167 0.29 -0.3 1,200,952 + Synpcc7942_1167 0.32 -0.6 1,200,989 + Synpcc7942_1167 0.39 -0.2 1,201,002 + Synpcc7942_1167 0.41 +0.3 1,201,023 - Synpcc7942_1167 0.45 -0.5 1,201,034 + Synpcc7942_1167 0.47 -0.4 1,201,035 - Synpcc7942_1167 0.47 -0.6 1,201,039 + Synpcc7942_1167 0.48 -0.4 1,201,042 - Synpcc7942_1167 0.48 -0.2 1,201,042 - Synpcc7942_1167 0.48 +0.8 1,201,057 + Synpcc7942_1167 0.51 -0.6 1,201,059 + Synpcc7942_1167 0.51 -0.7 1,201,067 + Synpcc7942_1167 0.53 -0.0 1,201,067 + +0.9 1,201,075 - Synpcc7942_1167 0.54 -0.3 1,201,080 - Synpcc7942_1167 0.55 -1.8 1,201,097 + Synpcc7942_1167 0.58 +0.0 1,201,138 + Synpcc7942_1167 0.65 -0.5 1,201,247 - Synpcc7942_1167 0.85 +0.4 1,201,278 - -0.3 1,201,318 + -0.4 1,201,325 + +0.5 1,201,326 - +0.5 1,201,419 + cpmA Synpcc7942_1168 0.12 -0.6 1,201,541 + cpmA Synpcc7942_1168 0.27 -0.6 1,201,549 - cpmA Synpcc7942_1168 0.28 -0.4 1,201,624 + cpmA Synpcc7942_1168 0.38 -2.1 1,202,031 + -1.2 1,202,032 + -0.1 1,202,083 + +0.6 1,202,083 + -1.0 1,202,112 + -0.1 1,202,150 + -0.5 1,202,156 - -1.1 1,202,170 - -0.1 1,202,173 + +0.2 1,202,181 - +0.0 1,202,191 - +0.1 1,202,191 - +1.4 1,202,191 - -1.6 1,202,218 + -0.7 1,202,237 - +0.6 1,202,469 - Synpcc7942_1169 0.21 -0.8 1,202,481 - Synpcc7942_1169 0.21 +0.2 1,202,538 - Synpcc7942_1169 0.25 -0.5 1,202,538 - Synpcc7942_1169 0.25 -0.6 1,202,538 - Synpcc7942_1169 0.25 -0.5 1,202,568 + Synpcc7942_1169 0.26 +0.3 1,202,568 + Synpcc7942_1169 0.26 -1.8 1,202,576 - Synpcc7942_1169 0.27 -0.2 1,202,608 + Synpcc7942_1169 0.29 -0.4 1,202,625 + Synpcc7942_1169 0.30 -1.0 1,202,640 - Synpcc7942_1169 0.30 +0.5 1,202,642 + Synpcc7942_1169 0.31 -0.9 1,202,650 - Synpcc7942_1169 0.31 +0.9 1,202,666 + Synpcc7942_1169 0.32 +0.4 1,202,726 + Synpcc7942_1169 0.35 +0.9 1,202,726 + Synpcc7942_1169 0.35 -0.6 1,202,797 - Synpcc7942_1169 0.39 -0.2 1,202,802 - Synpcc7942_1169 0.40 -0.9 1,202,802 - Synpcc7942_1169 0.40 -0.6 1,202,913 + Synpcc7942_1169 0.46 -0.8 1,202,920 - Synpcc7942_1169 0.46 +0.1 1,202,968 + Synpcc7942_1169 0.49 +0.3 1,202,968 + Synpcc7942_1169 0.49 -0.1 1,202,979 + Synpcc7942_1169 0.50 +1.9 1,202,979 + Synpcc7942_1169 0.50 -0.6 1,202,979 + Synpcc7942_1169 0.50 -0.2 1,202,979 + Synpcc7942_1169 0.50 +0.7 1,202,979 + Synpcc7942_1169 0.50 +2.4 1,202,979 + Synpcc7942_1169 0.50 +0.9 1,202,987 - Synpcc7942_1169 0.50 -0.6 1,203,085 + Synpcc7942_1169 0.56 +0.1
Or see this region's nucleotide sequence