Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1168

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1166 and Synpcc7942_1167 are separated by 10 nucleotidesSynpcc7942_1167 and cpmA overlap by 4 nucleotidescpmA and Synpcc7942_1169 overlap by 8 nucleotides Synpcc7942_1166: Synpcc7942_1166 - hypothetical protein, at 1,199,437 to 1,200,762 _1166 Synpcc7942_1167: Synpcc7942_1167 - hypothetical protein, at 1,200,773 to 1,201,330 _1167 Synpcc7942_1168: cpmA - circadian phase modifier CpmA, at 1,201,327 to 1,202,109 cpmA Synpcc7942_1169: Synpcc7942_1169 - oligopeptide-binding protein of oligopeptide ABC transporter, at 1,202,102 to 1,203,865 _1169 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1 2at 1200.492 kb on - strand, within Synpcc7942_1166at 1200.507 kb on + strand, within Synpcc7942_1166at 1200.512 kb on + strand, within Synpcc7942_1166at 1200.562 kb on + strand, within Synpcc7942_1166at 1200.568 kb on + strand, within Synpcc7942_1166at 1200.573 kb on + strand, within Synpcc7942_1166at 1200.693 kb on + strandat 1200.719 kb on - strandat 1200.719 kb on - strandat 1200.729 kb on - strandat 1200.738 kb on + strandat 1200.759 kb on + strandat 1200.882 kb on + strand, within Synpcc7942_1167at 1200.882 kb on + strand, within Synpcc7942_1167at 1200.885 kb on - strand, within Synpcc7942_1167at 1200.890 kb on - strand, within Synpcc7942_1167at 1200.890 kb on - strand, within Synpcc7942_1167at 1200.920 kb on + strand, within Synpcc7942_1167at 1200.921 kb on + strand, within Synpcc7942_1167at 1200.933 kb on + strand, within Synpcc7942_1167at 1200.933 kb on + strand, within Synpcc7942_1167at 1200.933 kb on + strand, within Synpcc7942_1167at 1200.933 kb on + strand, within Synpcc7942_1167at 1200.952 kb on + strand, within Synpcc7942_1167at 1200.989 kb on + strand, within Synpcc7942_1167at 1201.002 kb on + strand, within Synpcc7942_1167at 1201.023 kb on - strand, within Synpcc7942_1167at 1201.034 kb on + strand, within Synpcc7942_1167at 1201.035 kb on - strand, within Synpcc7942_1167at 1201.039 kb on + strand, within Synpcc7942_1167at 1201.042 kb on - strand, within Synpcc7942_1167at 1201.042 kb on - strand, within Synpcc7942_1167at 1201.057 kb on + strand, within Synpcc7942_1167at 1201.059 kb on + strand, within Synpcc7942_1167at 1201.067 kb on + strand, within Synpcc7942_1167at 1201.067 kb on + strandat 1201.075 kb on - strand, within Synpcc7942_1167at 1201.080 kb on - strand, within Synpcc7942_1167at 1201.097 kb on + strand, within Synpcc7942_1167at 1201.138 kb on + strand, within Synpcc7942_1167at 1201.247 kb on - strand, within Synpcc7942_1167at 1201.278 kb on - strandat 1201.318 kb on + strandat 1201.325 kb on + strandat 1201.326 kb on - strandat 1201.419 kb on + strand, within cpmAat 1201.541 kb on + strand, within cpmAat 1201.549 kb on - strand, within cpmAat 1201.624 kb on + strand, within cpmAat 1202.031 kb on + strandat 1202.032 kb on + strandat 1202.083 kb on + strandat 1202.083 kb on + strandat 1202.112 kb on + strandat 1202.150 kb on + strandat 1202.156 kb on - strandat 1202.170 kb on - strandat 1202.173 kb on + strandat 1202.181 kb on - strandat 1202.191 kb on - strandat 1202.191 kb on - strandat 1202.191 kb on - strandat 1202.218 kb on + strandat 1202.237 kb on - strandat 1202.469 kb on - strand, within Synpcc7942_1169at 1202.481 kb on - strand, within Synpcc7942_1169at 1202.538 kb on - strand, within Synpcc7942_1169at 1202.538 kb on - strand, within Synpcc7942_1169at 1202.538 kb on - strand, within Synpcc7942_1169at 1202.568 kb on + strand, within Synpcc7942_1169at 1202.568 kb on + strand, within Synpcc7942_1169at 1202.576 kb on - strand, within Synpcc7942_1169at 1202.608 kb on + strand, within Synpcc7942_1169at 1202.625 kb on + strand, within Synpcc7942_1169at 1202.640 kb on - strand, within Synpcc7942_1169at 1202.642 kb on + strand, within Synpcc7942_1169at 1202.650 kb on - strand, within Synpcc7942_1169at 1202.666 kb on + strand, within Synpcc7942_1169at 1202.726 kb on + strand, within Synpcc7942_1169at 1202.726 kb on + strand, within Synpcc7942_1169at 1202.797 kb on - strand, within Synpcc7942_1169at 1202.802 kb on - strand, within Synpcc7942_1169at 1202.802 kb on - strand, within Synpcc7942_1169at 1202.913 kb on + strand, within Synpcc7942_1169at 1202.920 kb on - strand, within Synpcc7942_1169at 1202.968 kb on + strand, within Synpcc7942_1169at 1202.968 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.979 kb on + strand, within Synpcc7942_1169at 1202.987 kb on - strand, within Synpcc7942_1169at 1203.085 kb on + strand, within Synpcc7942_1169

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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1,200,492 - Synpcc7942_1166 0.80 -0.1
1,200,507 + Synpcc7942_1166 0.81 -0.8
1,200,512 + Synpcc7942_1166 0.81 -0.5
1,200,562 + Synpcc7942_1166 0.85 +1.1
1,200,568 + Synpcc7942_1166 0.85 +0.1
1,200,573 + Synpcc7942_1166 0.86 +0.7
1,200,693 + -0.2
1,200,719 - -0.9
1,200,719 - +0.3
1,200,729 - +0.6
1,200,738 + +1.4
1,200,759 + +0.3
1,200,882 + Synpcc7942_1167 0.20 -0.1
1,200,882 + Synpcc7942_1167 0.20 +0.9
1,200,885 - Synpcc7942_1167 0.20 -0.1
1,200,890 - Synpcc7942_1167 0.21 +0.6
1,200,890 - Synpcc7942_1167 0.21 -0.7
1,200,920 + Synpcc7942_1167 0.26 +0.9
1,200,921 + Synpcc7942_1167 0.27 -0.2
1,200,933 + Synpcc7942_1167 0.29 +0.6
1,200,933 + Synpcc7942_1167 0.29 -0.9
1,200,933 + Synpcc7942_1167 0.29 +0.8
1,200,933 + Synpcc7942_1167 0.29 -0.3
1,200,952 + Synpcc7942_1167 0.32 -0.6
1,200,989 + Synpcc7942_1167 0.39 -0.2
1,201,002 + Synpcc7942_1167 0.41 +0.3
1,201,023 - Synpcc7942_1167 0.45 -0.5
1,201,034 + Synpcc7942_1167 0.47 -0.4
1,201,035 - Synpcc7942_1167 0.47 -0.6
1,201,039 + Synpcc7942_1167 0.48 -0.4
1,201,042 - Synpcc7942_1167 0.48 -0.2
1,201,042 - Synpcc7942_1167 0.48 +0.8
1,201,057 + Synpcc7942_1167 0.51 -0.6
1,201,059 + Synpcc7942_1167 0.51 -0.7
1,201,067 + Synpcc7942_1167 0.53 -0.0
1,201,067 + +0.9
1,201,075 - Synpcc7942_1167 0.54 -0.3
1,201,080 - Synpcc7942_1167 0.55 -1.8
1,201,097 + Synpcc7942_1167 0.58 +0.0
1,201,138 + Synpcc7942_1167 0.65 -0.5
1,201,247 - Synpcc7942_1167 0.85 +0.4
1,201,278 - -0.3
1,201,318 + -0.4
1,201,325 + +0.5
1,201,326 - +0.5
1,201,419 + cpmA Synpcc7942_1168 0.12 -0.6
1,201,541 + cpmA Synpcc7942_1168 0.27 -0.6
1,201,549 - cpmA Synpcc7942_1168 0.28 -0.4
1,201,624 + cpmA Synpcc7942_1168 0.38 -2.1
1,202,031 + -1.2
1,202,032 + -0.1
1,202,083 + +0.6
1,202,083 + -1.0
1,202,112 + -0.1
1,202,150 + -0.5
1,202,156 - -1.1
1,202,170 - -0.1
1,202,173 + +0.2
1,202,181 - +0.0
1,202,191 - +0.1
1,202,191 - +1.4
1,202,191 - -1.6
1,202,218 + -0.7
1,202,237 - +0.6
1,202,469 - Synpcc7942_1169 0.21 -0.8
1,202,481 - Synpcc7942_1169 0.21 +0.2
1,202,538 - Synpcc7942_1169 0.25 -0.5
1,202,538 - Synpcc7942_1169 0.25 -0.6
1,202,538 - Synpcc7942_1169 0.25 -0.5
1,202,568 + Synpcc7942_1169 0.26 +0.3
1,202,568 + Synpcc7942_1169 0.26 -1.8
1,202,576 - Synpcc7942_1169 0.27 -0.2
1,202,608 + Synpcc7942_1169 0.29 -0.4
1,202,625 + Synpcc7942_1169 0.30 -1.0
1,202,640 - Synpcc7942_1169 0.30 +0.5
1,202,642 + Synpcc7942_1169 0.31 -0.9
1,202,650 - Synpcc7942_1169 0.31 +0.9
1,202,666 + Synpcc7942_1169 0.32 +0.4
1,202,726 + Synpcc7942_1169 0.35 +0.9
1,202,726 + Synpcc7942_1169 0.35 -0.6
1,202,797 - Synpcc7942_1169 0.39 -0.2
1,202,802 - Synpcc7942_1169 0.40 -0.9
1,202,802 - Synpcc7942_1169 0.40 -0.6
1,202,913 + Synpcc7942_1169 0.46 -0.8
1,202,920 - Synpcc7942_1169 0.46 +0.1
1,202,968 + Synpcc7942_1169 0.49 +0.3
1,202,968 + Synpcc7942_1169 0.49 -0.1
1,202,979 + Synpcc7942_1169 0.50 +1.9
1,202,979 + Synpcc7942_1169 0.50 -0.6
1,202,979 + Synpcc7942_1169 0.50 -0.2
1,202,979 + Synpcc7942_1169 0.50 +0.7
1,202,979 + Synpcc7942_1169 0.50 +2.4
1,202,979 + Synpcc7942_1169 0.50 +0.9
1,202,987 - Synpcc7942_1169 0.50 -0.6
1,203,085 + Synpcc7942_1169 0.56 +0.1

Or see this region's nucleotide sequence