Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0980 and ssrA are separated by 63 nucleotides ssrA and Synpcc7942_0981 are separated by 69 nucleotides Synpcc7942_0981 and Synpcc7942_0982 are separated by 58 nucleotides Synpcc7942_0982 and deoC are separated by 19 nucleotides
Synpcc7942_0980: Synpcc7942_0980 - hypothetical protein, at 988,653 to 989,276
_0980
Synpcc7942_R0017: ssrA - no description, at 989,340 to 989,730
ssrA
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Synpcc7942_0982: Synpcc7942_0982 - hypothetical protein, at 991,553 to 992,167
_0982
Synpcc7942_0983: deoC - deoxyribose-phosphate aldolase, at 992,187 to 992,873
deoC
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 989.058 kb on - strand, within Synpcc7942_0980 at 989.095 kb on - strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.111 kb on - strand, within Synpcc7942_0980 at 989.122 kb on + strand, within Synpcc7942_0980 at 989.132 kb on + strand, within Synpcc7942_0980 at 989.135 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.158 kb on - strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.171 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.184 kb on + strand, within Synpcc7942_0980 at 989.186 kb on - strand, within Synpcc7942_0980 at 989.195 kb on - strand, within Synpcc7942_0980 at 989.202 kb on - strand, within Synpcc7942_0980 at 989.204 kb on + strand, within Synpcc7942_0980 at 989.209 kb on + strand, within Synpcc7942_0980 at 989.212 kb on - strand, within Synpcc7942_0980 at 989.222 kb on - strand at 989.222 kb on - strand at 989.222 kb on - strand at 989.224 kb on + strand at 989.249 kb on + strand at 989.281 kb on - strand at 989.742 kb on + strand at 989.756 kb on + strand at 989.762 kb on - strand at 989.763 kb on - strand at 989.774 kb on - strand at 989.837 kb on + strand at 989.965 kb on + strand at 989.970 kb on + strand, within Synpcc7942_0981 at 989.970 kb on + strand, within Synpcc7942_0981 at 989.982 kb on - strand, within Synpcc7942_0981 at 990.077 kb on - strand, within Synpcc7942_0981 at 990.125 kb on - strand, within Synpcc7942_0981 at 990.137 kb on - strand, within Synpcc7942_0981 at 990.205 kb on + strand, within Synpcc7942_0981 at 990.211 kb on - strand, within Synpcc7942_0981 at 990.213 kb on - strand, within Synpcc7942_0981 at 990.235 kb on - strand, within Synpcc7942_0981 at 990.244 kb on + strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981 at 990.288 kb on + strand, within Synpcc7942_0981 at 990.296 kb on - strand, within Synpcc7942_0981 at 990.296 kb on - strand, within Synpcc7942_0981 at 990.299 kb on + strand at 990.331 kb on + strand, within Synpcc7942_0981 at 990.331 kb on + strand, within Synpcc7942_0981 at 990.339 kb on - strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.356 kb on + strand, within Synpcc7942_0981 at 990.356 kb on + strand, within Synpcc7942_0981 at 990.361 kb on + strand at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.366 kb on + strand, within Synpcc7942_0981 at 990.369 kb on - strand, within Synpcc7942_0981 at 990.380 kb on + strand, within Synpcc7942_0981 at 990.427 kb on + strand, within Synpcc7942_0981 at 990.443 kb on + strand, within Synpcc7942_0981 at 990.471 kb on + strand, within Synpcc7942_0981 at 990.478 kb on + strand, within Synpcc7942_0981 at 990.479 kb on - strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.549 kb on - strand, within Synpcc7942_0981 at 990.549 kb on - strand, within Synpcc7942_0981 at 990.583 kb on - strand, within Synpcc7942_0981 at 990.630 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.684 kb on + strand, within Synpcc7942_0981 at 990.692 kb on + strand, within Synpcc7942_0981 at 990.697 kb on + strand, within Synpcc7942_0981 at 990.759 kb on - strand, within Synpcc7942_0981 at 990.766 kb on - strand, within Synpcc7942_0981 at 990.782 kb on + strand, within Synpcc7942_0981 at 990.819 kb on + strand, within Synpcc7942_0981 at 990.830 kb on - strand, within Synpcc7942_0981 at 990.856 kb on + strand, within Synpcc7942_0981 at 990.864 kb on - strand, within Synpcc7942_0981 at 990.874 kb on + strand at 990.899 kb on - strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.930 kb on + strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.978 kb on - strand, within Synpcc7942_0981 at 991.001 kb on - strand, within Synpcc7942_0981 at 991.022 kb on - strand, within Synpcc7942_0981 at 991.027 kb on + strand, within Synpcc7942_0981 at 991.037 kb on + strand, within Synpcc7942_0981 at 991.105 kb on - strand, within Synpcc7942_0981 at 991.181 kb on - strand, within Synpcc7942_0981 at 991.212 kb on - strand, within Synpcc7942_0981 at 991.236 kb on + strand, within Synpcc7942_0981 at 991.244 kb on - strand, within Synpcc7942_0981 at 991.249 kb on + strand, within Synpcc7942_0981 at 991.318 kb on + strand, within Synpcc7942_0981 at 991.341 kb on - strand at 991.348 kb on - strand at 991.348 kb on - strand at 991.350 kb on - strand at 991.350 kb on - strand at 991.420 kb on - strand at 991.432 kb on + strand at 991.432 kb on + strand at 991.440 kb on - strand at 991.465 kb on - strand at 991.478 kb on + strand at 991.478 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.507 kb on - strand at 991.509 kb on + strand at 991.526 kb on + strand at 991.534 kb on - strand at 991.536 kb on - strand at 991.544 kb on - strand at 991.548 kb on + strand at 991.548 kb on + strand at 991.554 kb on - strand at 991.555 kb on + strand at 991.556 kb on - strand at 991.556 kb on - strand at 991.567 kb on + strand at 991.580 kb on + strand at 991.584 kb on + strand at 991.657 kb on + strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.684 kb on - strand, within Synpcc7942_0982 at 991.693 kb on + strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.778 kb on + strand, within Synpcc7942_0982 at 991.786 kb on - strand, within Synpcc7942_0982 at 991.806 kb on - strand, within Synpcc7942_0982 at 991.904 kb on - strand, within Synpcc7942_0982 at 991.927 kb on - strand, within Synpcc7942_0982 at 991.931 kb on + strand, within Synpcc7942_0982 at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.191 kb on - strand at 992.213 kb on - strand at 992.219 kb on + strand at 992.257 kb on + strand, within deoC at 992.265 kb on - strand, within deoC at 992.320 kb on - strand, within deoC at 992.325 kb on - strand, within deoC at 992.343 kb on - strand, within deoC at 992.353 kb on + strand, within deoC at 992.368 kb on + strand, within deoC at 992.370 kb on + strand, within deoC at 992.376 kb on - strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.468 kb on + strand, within deoC at 992.492 kb on - strand, within deoC at 992.492 kb on - strand, within deoC
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 989,058 - Synpcc7942_0980 0.65 -1.2 989,095 - Synpcc7942_0980 0.71 -1.3 989,098 + Synpcc7942_0980 0.71 -0.6 989,098 + Synpcc7942_0980 0.71 +0.1 989,111 - Synpcc7942_0980 0.73 -1.0 989,122 + Synpcc7942_0980 0.75 -0.9 989,132 + Synpcc7942_0980 0.77 +1.9 989,135 - Synpcc7942_0980 0.77 -0.2 989,140 - +0.9 989,140 - Synpcc7942_0980 0.78 -1.1 989,140 - Synpcc7942_0980 0.78 +0.6 989,140 - Synpcc7942_0980 0.78 -0.3 989,140 - Synpcc7942_0980 0.78 -0.2 989,146 + Synpcc7942_0980 0.79 +0.9 989,146 + Synpcc7942_0980 0.79 -0.4 989,154 - Synpcc7942_0980 0.80 +0.1 989,154 - Synpcc7942_0980 0.80 -1.8 989,158 - Synpcc7942_0980 0.81 +0.9 989,168 + Synpcc7942_0980 0.83 +0.4 989,168 + Synpcc7942_0980 0.83 +0.5 989,168 + Synpcc7942_0980 0.83 +0.4 989,168 + Synpcc7942_0980 0.83 -0.2 989,168 + Synpcc7942_0980 0.83 -0.1 989,168 + Synpcc7942_0980 0.83 +0.1 989,168 + Synpcc7942_0980 0.83 -0.5 989,171 - Synpcc7942_0980 0.83 +0.4 989,176 - Synpcc7942_0980 0.84 -0.4 989,176 - Synpcc7942_0980 0.84 +1.5 989,176 - Synpcc7942_0980 0.84 -0.7 989,176 - Synpcc7942_0980 0.84 -1.2 989,176 - Synpcc7942_0980 0.84 +0.7 989,184 + Synpcc7942_0980 0.85 -1.6 989,186 - Synpcc7942_0980 0.85 -1.2 989,195 - Synpcc7942_0980 0.87 -0.1 989,202 - Synpcc7942_0980 0.88 -0.6 989,204 + Synpcc7942_0980 0.88 -1.2 989,209 + Synpcc7942_0980 0.89 -0.2 989,212 - Synpcc7942_0980 0.90 +0.7 989,222 - +0.2 989,222 - -0.2 989,222 - +0.7 989,224 + -0.3 989,249 + +0.9 989,281 - +0.4 989,742 + +1.4 989,756 + -0.4 989,762 - +0.4 989,763 - +1.4 989,774 - -0.4 989,837 + -0.4 989,965 + -1.8 989,970 + Synpcc7942_0981 0.10 -0.9 989,970 + Synpcc7942_0981 0.10 -2.6 989,982 - Synpcc7942_0981 0.11 -2.0 990,077 - Synpcc7942_0981 0.16 -2.4 990,125 - Synpcc7942_0981 0.19 -0.9 990,137 - Synpcc7942_0981 0.20 +0.4 990,205 + Synpcc7942_0981 0.24 -0.1 990,211 - Synpcc7942_0981 0.24 -1.0 990,213 - Synpcc7942_0981 0.24 -2.1 990,235 - Synpcc7942_0981 0.26 -0.7 990,244 + Synpcc7942_0981 0.26 -1.2 990,263 - Synpcc7942_0981 0.27 -1.1 990,263 - Synpcc7942_0981 0.27 -0.9 990,288 + Synpcc7942_0981 0.29 -0.9 990,296 - Synpcc7942_0981 0.29 -1.6 990,296 - Synpcc7942_0981 0.29 +0.4 990,299 + -0.6 990,331 + Synpcc7942_0981 0.31 -1.5 990,331 + Synpcc7942_0981 0.31 -0.1 990,339 - Synpcc7942_0981 0.32 -2.1 990,341 + Synpcc7942_0981 0.32 -3.1 990,341 + Synpcc7942_0981 0.32 -2.0 990,341 + Synpcc7942_0981 0.32 -1.2 990,341 + Synpcc7942_0981 0.32 +1.4 990,349 - Synpcc7942_0981 0.32 -0.4 990,349 - Synpcc7942_0981 0.32 +1.9 990,349 - Synpcc7942_0981 0.32 -2.0 990,349 - Synpcc7942_0981 0.32 -2.0 990,349 - Synpcc7942_0981 0.32 -0.9 990,349 - Synpcc7942_0981 0.32 -0.4 990,349 - Synpcc7942_0981 0.32 -2.1 990,349 - Synpcc7942_0981 0.32 -2.6 990,356 + Synpcc7942_0981 0.33 -0.9 990,356 + Synpcc7942_0981 0.33 -2.1 990,361 + +0.9 990,364 - Synpcc7942_0981 0.33 -2.3 990,364 - Synpcc7942_0981 0.33 +0.9 990,364 - Synpcc7942_0981 0.33 -0.2 990,364 - Synpcc7942_0981 0.33 -1.4 990,366 + Synpcc7942_0981 0.33 -1.1 990,369 - Synpcc7942_0981 0.34 -1.4 990,380 + Synpcc7942_0981 0.34 -1.2 990,427 + Synpcc7942_0981 0.37 -1.3 990,443 + Synpcc7942_0981 0.38 -0.4 990,471 + Synpcc7942_0981 0.40 -0.9 990,478 + Synpcc7942_0981 0.40 -1.1 990,479 - Synpcc7942_0981 0.40 -2.6 990,541 + Synpcc7942_0981 0.44 -2.7 990,541 + Synpcc7942_0981 0.44 -3.3 990,541 + Synpcc7942_0981 0.44 -1.6 990,541 + Synpcc7942_0981 0.44 +0.9 990,549 - Synpcc7942_0981 0.44 -0.6 990,549 - Synpcc7942_0981 0.44 -3.1 990,583 - Synpcc7942_0981 0.46 -0.8 990,630 + Synpcc7942_0981 0.49 -1.1 990,632 + Synpcc7942_0981 0.49 -2.7 990,632 + Synpcc7942_0981 0.49 -1.1 990,684 + Synpcc7942_0981 0.52 -0.5 990,692 + Synpcc7942_0981 0.53 -0.5 990,697 + Synpcc7942_0981 0.53 -2.0 990,759 - Synpcc7942_0981 0.57 -1.4 990,766 - Synpcc7942_0981 0.57 -1.8 990,782 + Synpcc7942_0981 0.58 -1.1 990,819 + Synpcc7942_0981 0.60 +0.2 990,830 - Synpcc7942_0981 0.61 -0.1 990,856 + Synpcc7942_0981 0.62 -1.2 990,864 - Synpcc7942_0981 0.63 -3.9 990,874 + +0.4 990,899 - Synpcc7942_0981 0.65 -0.5 990,914 + Synpcc7942_0981 0.66 +0.3 990,914 + Synpcc7942_0981 0.66 -0.9 990,914 + Synpcc7942_0981 0.66 -0.4 990,922 - Synpcc7942_0981 0.66 -1.4 990,922 - Synpcc7942_0981 0.66 -0.2 990,922 - Synpcc7942_0981 0.66 -1.2 990,922 - Synpcc7942_0981 0.66 -2.7 990,922 - Synpcc7942_0981 0.66 -1.4 990,922 - Synpcc7942_0981 0.66 -2.8 990,930 + Synpcc7942_0981 0.67 -1.6 990,967 - Synpcc7942_0981 0.69 -0.4 990,967 - Synpcc7942_0981 0.69 -2.0 990,978 - Synpcc7942_0981 0.69 -0.8 991,001 - Synpcc7942_0981 0.71 -0.5 991,022 - Synpcc7942_0981 0.72 -0.9 991,027 + Synpcc7942_0981 0.72 -0.2 991,037 + Synpcc7942_0981 0.73 -0.6 991,105 - Synpcc7942_0981 0.77 -0.1 991,181 - Synpcc7942_0981 0.81 -1.4 991,212 - Synpcc7942_0981 0.83 -0.7 991,236 + Synpcc7942_0981 0.85 -0.1 991,244 - Synpcc7942_0981 0.85 +0.4 991,249 + Synpcc7942_0981 0.85 -0.1 991,318 + Synpcc7942_0981 0.90 +0.4 991,341 - +0.9 991,348 - -0.6 991,348 - -1.2 991,350 - -2.0 991,350 - -0.4 991,420 - +0.6 991,432 + -2.3 991,432 + -2.2 991,440 - +0.1 991,465 - -0.4 991,478 + -0.1 991,478 + -1.5 991,499 + -0.1 991,499 + -1.3 991,499 + +0.1 991,507 - -1.1 991,509 + -0.1 991,526 + -2.5 991,534 - -0.8 991,536 - -2.0 991,544 - -0.1 991,548 + -0.3 991,548 + +0.2 991,554 - -0.4 991,555 + -0.5 991,556 - -1.2 991,556 - +0.9 991,567 + -0.4 991,580 + +0.4 991,584 + -0.9 991,657 + Synpcc7942_0982 0.17 +0.9 991,660 - Synpcc7942_0982 0.17 -1.7 991,660 - Synpcc7942_0982 0.17 +0.2 991,684 - Synpcc7942_0982 0.21 -0.9 991,693 + Synpcc7942_0982 0.23 -1.0 991,706 - Synpcc7942_0982 0.25 +0.9 991,706 - Synpcc7942_0982 0.25 +0.1 991,706 - Synpcc7942_0982 0.25 -0.9 991,778 + Synpcc7942_0982 0.37 -1.0 991,786 - Synpcc7942_0982 0.38 -1.4 991,806 - Synpcc7942_0982 0.41 -0.1 991,904 - Synpcc7942_0982 0.57 -0.1 991,927 - Synpcc7942_0982 0.61 -1.5 991,931 + Synpcc7942_0982 0.61 -0.1 992,183 + +1.9 992,183 + -1.4 992,183 + +0.3 992,183 + +0.5 992,191 - -0.8 992,213 - -0.8 992,219 + -1.0 992,257 + deoC Synpcc7942_0983 0.10 +0.1 992,265 - deoC Synpcc7942_0983 0.11 +0.4 992,320 - deoC Synpcc7942_0983 0.19 +1.4 992,325 - deoC Synpcc7942_0983 0.20 +0.2 992,343 - deoC Synpcc7942_0983 0.23 -0.2 992,353 + deoC Synpcc7942_0983 0.24 -0.1 992,368 + deoC Synpcc7942_0983 0.26 -1.4 992,370 + deoC Synpcc7942_0983 0.27 +0.3 992,376 - deoC Synpcc7942_0983 0.28 +0.4 992,426 + deoC Synpcc7942_0983 0.35 +1.2 992,426 + deoC Synpcc7942_0983 0.35 -0.3 992,426 + deoC Synpcc7942_0983 0.35 +0.6 992,434 - deoC Synpcc7942_0983 0.36 +0.5 992,434 - deoC Synpcc7942_0983 0.36 +0.2 992,434 - deoC Synpcc7942_0983 0.36 -0.6 992,434 - deoC Synpcc7942_0983 0.36 +0.1 992,434 - deoC Synpcc7942_0983 0.36 -0.6 992,434 - deoC Synpcc7942_0983 0.36 +0.9 992,468 + deoC Synpcc7942_0983 0.41 +0.1 992,492 - deoC Synpcc7942_0983 0.44 -0.3 992,492 - deoC Synpcc7942_0983 0.44 +0.0
Or see this region's nucleotide sequence