Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemF and Synpcc7942_0675 overlap by 4 nucleotides Synpcc7942_0675 and Synpcc7942_0676 are separated by 95 nucleotides
Synpcc7942_0674: hemF - coproporphyrinogen III oxidase, at 669,347 to 670,300
hemF
Synpcc7942_0675: Synpcc7942_0675 - hypothetical protein, at 670,297 to 670,818
_0675
Synpcc7942_0676: Synpcc7942_0676 - hypothetical protein, at 670,914 to 672,119
_0676
Position (kb) 670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 670.312 kb on + strand at 670.330 kb on + strand at 670.342 kb on - strand at 670.347 kb on - strand at 670.366 kb on + strand, within Synpcc7942_0675 at 670.374 kb on - strand at 670.374 kb on - strand, within Synpcc7942_0675 at 670.379 kb on - strand, within Synpcc7942_0675 at 670.395 kb on + strand, within Synpcc7942_0675 at 670.401 kb on + strand, within Synpcc7942_0675 at 670.401 kb on + strand, within Synpcc7942_0675 at 670.405 kb on + strand, within Synpcc7942_0675 at 670.409 kb on - strand, within Synpcc7942_0675 at 670.435 kb on + strand, within Synpcc7942_0675 at 670.435 kb on + strand, within Synpcc7942_0675 at 670.455 kb on + strand, within Synpcc7942_0675 at 670.455 kb on + strand, within Synpcc7942_0675 at 670.471 kb on + strand, within Synpcc7942_0675 at 670.533 kb on + strand, within Synpcc7942_0675 at 670.579 kb on + strand, within Synpcc7942_0675 at 670.584 kb on + strand, within Synpcc7942_0675 at 670.619 kb on - strand, within Synpcc7942_0675 at 670.668 kb on - strand, within Synpcc7942_0675 at 670.684 kb on - strand, within Synpcc7942_0675 at 670.718 kb on - strand, within Synpcc7942_0675 at 670.728 kb on + strand, within Synpcc7942_0675 at 670.791 kb on - strand at 670.810 kb on + strand at 670.814 kb on + strand at 670.837 kb on + strand at 670.845 kb on - strand at 670.847 kb on + strand at 670.847 kb on + strand at 670.847 kb on + strand at 670.849 kb on + strand at 670.849 kb on + strand at 670.855 kb on - strand at 670.862 kb on + strand at 670.885 kb on + strand at 670.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 670,312 + -2.0 670,330 + -2.9 670,342 - -2.9 670,347 - -2.2 670,366 + Synpcc7942_0675 0.13 -2.3 670,374 - +0.4 670,374 - Synpcc7942_0675 0.15 -0.6 670,379 - Synpcc7942_0675 0.16 -0.6 670,395 + Synpcc7942_0675 0.19 -1.7 670,401 + Synpcc7942_0675 0.20 +2.8 670,401 + Synpcc7942_0675 0.20 +0.7 670,405 + Synpcc7942_0675 0.21 -2.3 670,409 - Synpcc7942_0675 0.21 -2.5 670,435 + Synpcc7942_0675 0.26 -2.9 670,435 + Synpcc7942_0675 0.26 -1.2 670,455 + Synpcc7942_0675 0.30 -1.2 670,455 + Synpcc7942_0675 0.30 -0.0 670,471 + Synpcc7942_0675 0.33 -1.7 670,533 + Synpcc7942_0675 0.45 -0.3 670,579 + Synpcc7942_0675 0.54 -1.5 670,584 + Synpcc7942_0675 0.55 -0.0 670,619 - Synpcc7942_0675 0.62 -1.8 670,668 - Synpcc7942_0675 0.71 -3.1 670,684 - Synpcc7942_0675 0.74 -0.6 670,718 - Synpcc7942_0675 0.81 -1.1 670,728 + Synpcc7942_0675 0.83 -0.8 670,791 - -1.3 670,810 + -1.7 670,814 + -0.8 670,837 + -0.1 670,845 - -0.2 670,847 + -2.5 670,847 + -1.3 670,847 + +1.8 670,849 + +0.7 670,849 + -0.8 670,855 - -0.2 670,862 + -3.5 670,885 + -0.1 670,901 - -0.3
Or see this region's nucleotide sequence