Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0658

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsbC and Synpcc7942_0657 are separated by 387 nucleotidesSynpcc7942_0657 and Synpcc7942_0658 are separated by 169 nucleotidesSynpcc7942_0658 and Synpcc7942_0659 are separated by 83 nucleotides Synpcc7942_0656: psbC - photosystem II 44 kDa subunit reaction center protein, at 651,274 to 652,659 psbC Synpcc7942_0657: Synpcc7942_0657 - hypothetical protein, at 653,047 to 653,388 _0657 Synpcc7942_0658: Synpcc7942_0658 - hypothetical protein, at 653,558 to 653,770 _0658 Synpcc7942_0659: Synpcc7942_0659 - Rad3-related DNA helicases-like, at 653,854 to 655,275 _0659 Position (kb) 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 652.738 kb on + strandat 652.790 kb on + strandat 652.811 kb on - strandat 652.827 kb on + strandat 652.876 kb on - strandat 652.892 kb on - strandat 652.980 kb on - strandat 652.989 kb on - strandat 652.997 kb on + strandat 653.060 kb on - strandat 653.127 kb on - strand, within Synpcc7942_0657at 653.362 kb on + strandat 653.404 kb on - strandat 653.520 kb on + strandat 653.520 kb on + strandat 653.523 kb on - strandat 653.542 kb on + strandat 653.557 kb on - strandat 653.579 kb on + strandat 653.587 kb on - strand, within Synpcc7942_0658at 653.587 kb on - strand, within Synpcc7942_0658at 653.587 kb on - strandat 653.589 kb on + strand, within Synpcc7942_0658at 653.794 kb on + strandat 653.807 kb on + strandat 653.821 kb on + strandat 653.859 kb on - strandat 653.879 kb on + strandat 653.879 kb on + strandat 653.879 kb on + strandat 653.879 kb on + strandat 653.879 kb on + strandat 653.887 kb on - strandat 653.898 kb on + strandat 653.898 kb on + strandat 653.914 kb on + strandat 653.916 kb on - strandat 654.002 kb on - strand, within Synpcc7942_0659at 654.043 kb on + strand, within Synpcc7942_0659at 654.129 kb on + strand, within Synpcc7942_0659at 654.134 kb on + strand, within Synpcc7942_0659at 654.137 kb on - strand, within Synpcc7942_0659at 654.147 kb on - strand, within Synpcc7942_0659at 654.174 kb on + strand, within Synpcc7942_0659at 654.174 kb on + strand, within Synpcc7942_0659at 654.174 kb on + strand, within Synpcc7942_0659at 654.182 kb on - strand, within Synpcc7942_0659at 654.182 kb on - strand, within Synpcc7942_0659at 654.182 kb on - strand, within Synpcc7942_0659at 654.195 kb on + strand, within Synpcc7942_0659at 654.203 kb on - strand, within Synpcc7942_0659at 654.203 kb on - strand, within Synpcc7942_0659at 654.212 kb on + strand, within Synpcc7942_0659at 654.222 kb on + strand, within Synpcc7942_0659at 654.222 kb on + strand, within Synpcc7942_0659at 654.222 kb on + strand, within Synpcc7942_0659at 654.243 kb on + strand, within Synpcc7942_0659at 654.251 kb on - strand, within Synpcc7942_0659at 654.315 kb on - strand, within Synpcc7942_0659at 654.317 kb on - strand, within Synpcc7942_0659at 654.334 kb on + strand, within Synpcc7942_0659at 654.336 kb on + strand, within Synpcc7942_0659at 654.356 kb on + strand, within Synpcc7942_0659at 654.364 kb on - strand, within Synpcc7942_0659at 654.369 kb on - strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.410 kb on + strand, within Synpcc7942_0659at 654.415 kb on + strand, within Synpcc7942_0659at 654.418 kb on - strand, within Synpcc7942_0659at 654.418 kb on - strandat 654.418 kb on - strand, within Synpcc7942_0659at 654.418 kb on - strand, within Synpcc7942_0659at 654.418 kb on - strand, within Synpcc7942_0659at 654.418 kb on - strand, within Synpcc7942_0659at 654.418 kb on - strand, within Synpcc7942_0659at 654.478 kb on - strand, within Synpcc7942_0659at 654.491 kb on + strand, within Synpcc7942_0659at 654.515 kb on + strand, within Synpcc7942_0659at 654.534 kb on - strand, within Synpcc7942_0659at 654.547 kb on - strand, within Synpcc7942_0659at 654.548 kb on - strand, within Synpcc7942_0659at 654.562 kb on + strand, within Synpcc7942_0659at 654.562 kb on + strand, within Synpcc7942_0659at 654.615 kb on - strand, within Synpcc7942_0659at 654.615 kb on - strandat 654.626 kb on + strand, within Synpcc7942_0659at 654.634 kb on - strand, within Synpcc7942_0659at 654.634 kb on - strand, within Synpcc7942_0659at 654.639 kb on - strand, within Synpcc7942_0659at 654.671 kb on - strand, within Synpcc7942_0659at 654.672 kb on - strand, within Synpcc7942_0659at 654.687 kb on + strand, within Synpcc7942_0659at 654.754 kb on - strand, within Synpcc7942_0659at 654.755 kb on - strand, within Synpcc7942_0659at 654.762 kb on + strand, within Synpcc7942_0659

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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652,738 + -0.5
652,790 + +2.4
652,811 - -0.8
652,827 + +0.6
652,876 - -0.6
652,892 - -1.4
652,980 - -0.4
652,989 - -0.4
652,997 + -0.4
653,060 - -0.3
653,127 - Synpcc7942_0657 0.23 -1.6
653,362 + -1.5
653,404 - -2.5
653,520 + +0.2
653,520 + -0.8
653,523 - -1.6
653,542 + +0.5
653,557 - +1.0
653,579 + +0.4
653,587 - Synpcc7942_0658 0.14 -0.6
653,587 - Synpcc7942_0658 0.14 -0.3
653,587 - +0.7
653,589 + Synpcc7942_0658 0.15 -1.7
653,794 + -0.3
653,807 + +0.6
653,821 + +0.3
653,859 - +0.4
653,879 + +0.4
653,879 + +0.3
653,879 + +1.1
653,879 + -0.5
653,879 + -2.3
653,887 - -0.5
653,898 + +0.3
653,898 + +0.5
653,914 + +0.4
653,916 - +0.1
654,002 - Synpcc7942_0659 0.10 -0.2
654,043 + Synpcc7942_0659 0.13 +0.6
654,129 + Synpcc7942_0659 0.19 +0.4
654,134 + Synpcc7942_0659 0.20 -0.2
654,137 - Synpcc7942_0659 0.20 -0.2
654,147 - Synpcc7942_0659 0.21 +1.0
654,174 + Synpcc7942_0659 0.23 +0.4
654,174 + Synpcc7942_0659 0.23 +1.0
654,174 + Synpcc7942_0659 0.23 -1.9
654,182 - Synpcc7942_0659 0.23 +1.1
654,182 - Synpcc7942_0659 0.23 +0.7
654,182 - Synpcc7942_0659 0.23 -0.7
654,195 + Synpcc7942_0659 0.24 -0.3
654,203 - Synpcc7942_0659 0.25 -0.3
654,203 - Synpcc7942_0659 0.25 +0.7
654,212 + Synpcc7942_0659 0.25 -0.3
654,222 + Synpcc7942_0659 0.26 +0.7
654,222 + Synpcc7942_0659 0.26 +0.2
654,222 + Synpcc7942_0659 0.26 +0.2
654,243 + Synpcc7942_0659 0.27 +0.7
654,251 - Synpcc7942_0659 0.28 +1.4
654,315 - Synpcc7942_0659 0.32 -0.0
654,317 - Synpcc7942_0659 0.33 -0.6
654,334 + Synpcc7942_0659 0.34 -0.5
654,336 + Synpcc7942_0659 0.34 -0.6
654,356 + Synpcc7942_0659 0.35 +0.0
654,364 - Synpcc7942_0659 0.36 +0.1
654,369 - Synpcc7942_0659 0.36 +1.2
654,410 + Synpcc7942_0659 0.39 +0.1
654,410 + Synpcc7942_0659 0.39 +0.3
654,410 + Synpcc7942_0659 0.39 +2.0
654,410 + Synpcc7942_0659 0.39 -0.4
654,410 + Synpcc7942_0659 0.39 +0.5
654,410 + Synpcc7942_0659 0.39 +0.2
654,410 + Synpcc7942_0659 0.39 +0.2
654,410 + Synpcc7942_0659 0.39 -0.0
654,415 + Synpcc7942_0659 0.39 -1.0
654,418 - Synpcc7942_0659 0.40 -1.7
654,418 - -0.8
654,418 - Synpcc7942_0659 0.40 +0.3
654,418 - Synpcc7942_0659 0.40 +1.0
654,418 - Synpcc7942_0659 0.40 +1.0
654,418 - Synpcc7942_0659 0.40 -0.2
654,418 - Synpcc7942_0659 0.40 -0.1
654,478 - Synpcc7942_0659 0.44 +1.2
654,491 + Synpcc7942_0659 0.45 +0.1
654,515 + Synpcc7942_0659 0.46 +0.9
654,534 - Synpcc7942_0659 0.48 +0.6
654,547 - Synpcc7942_0659 0.49 -1.5
654,548 - Synpcc7942_0659 0.49 +0.1
654,562 + Synpcc7942_0659 0.50 -0.7
654,562 + Synpcc7942_0659 0.50 -0.1
654,615 - Synpcc7942_0659 0.54 +1.2
654,615 - +0.4
654,626 + Synpcc7942_0659 0.54 +1.3
654,634 - Synpcc7942_0659 0.55 +0.4
654,634 - Synpcc7942_0659 0.55 -0.1
654,639 - Synpcc7942_0659 0.55 -1.3
654,671 - Synpcc7942_0659 0.57 -0.3
654,672 - Synpcc7942_0659 0.58 +0.2
654,687 + Synpcc7942_0659 0.59 +0.4
654,754 - Synpcc7942_0659 0.63 +0.7
654,755 - Synpcc7942_0659 0.63 -0.2
654,762 + Synpcc7942_0659 0.64 -0.2

Or see this region's nucleotide sequence