Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0628

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Gln and Synpcc7942_0627 are separated by 18 nucleotidesSynpcc7942_0627 and Synpcc7942_0628 are separated by 50 nucleotidesSynpcc7942_0628 and Synpcc7942_0629 overlap by 4 nucleotidesSynpcc7942_0629 and Synpcc7942_0630 are separated by 91 nucleotides Synpcc7942_R0037: tRNA-Gln - tRNA-Gln, at 620,372 to 620,443 tRNA-Gln Synpcc7942_0627: Synpcc7942_0627 - hypothetical protein, at 620,462 to 621,226 _0627 Synpcc7942_0628: Synpcc7942_0628 - spermidine synthase, at 621,277 to 622,137 _0628 Synpcc7942_0629: Synpcc7942_0629 - hypothetical protein, at 622,134 to 622,340 _0629 Synpcc7942_0630: Synpcc7942_0630 - hypothetical protein, at 622,432 to 623,574 _0630 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2at 620.283 kb on - strandat 620.288 kb on - strandat 620.438 kb on + strandat 620.451 kb on - strandat 620.467 kb on - strandat 620.570 kb on + strand, within Synpcc7942_0627at 620.574 kb on + strand, within Synpcc7942_0627at 620.586 kb on + strand, within Synpcc7942_0627at 620.594 kb on - strand, within Synpcc7942_0627at 620.594 kb on - strand, within Synpcc7942_0627at 620.629 kb on + strand, within Synpcc7942_0627at 620.629 kb on + strand, within Synpcc7942_0627at 620.629 kb on + strand, within Synpcc7942_0627at 620.629 kb on + strand, within Synpcc7942_0627at 620.629 kb on + strand, within Synpcc7942_0627at 620.637 kb on - strand, within Synpcc7942_0627at 620.637 kb on - strand, within Synpcc7942_0627at 620.657 kb on + strand, within Synpcc7942_0627at 620.686 kb on + strand, within Synpcc7942_0627at 620.694 kb on - strand, within Synpcc7942_0627at 620.708 kb on - strand, within Synpcc7942_0627at 620.710 kb on - strand, within Synpcc7942_0627at 620.731 kb on - strand, within Synpcc7942_0627at 620.745 kb on + strand, within Synpcc7942_0627at 620.753 kb on - strand, within Synpcc7942_0627at 620.807 kb on - strand, within Synpcc7942_0627at 620.811 kb on + strand, within Synpcc7942_0627at 620.835 kb on - strand, within Synpcc7942_0627at 620.878 kb on - strand, within Synpcc7942_0627at 620.924 kb on - strand, within Synpcc7942_0627at 620.953 kb on - strand, within Synpcc7942_0627at 620.993 kb on - strand, within Synpcc7942_0627at 621.078 kb on - strand, within Synpcc7942_0627at 621.106 kb on + strand, within Synpcc7942_0627at 621.106 kb on - strand, within Synpcc7942_0627at 621.111 kb on - strand, within Synpcc7942_0627at 621.175 kb on + strandat 621.212 kb on + strandat 621.223 kb on + strandat 621.228 kb on - strandat 621.233 kb on + strandat 621.235 kb on + strandat 621.240 kb on + strandat 621.243 kb on - strandat 621.248 kb on - strandat 621.248 kb on - strandat 621.248 kb on - strandat 621.251 kb on + strandat 621.256 kb on + strandat 621.259 kb on - strandat 621.261 kb on + strandat 621.274 kb on + strandat 621.352 kb on - strandat 621.657 kb on + strand, within Synpcc7942_0628at 621.704 kb on + strand, within Synpcc7942_0628at 621.712 kb on - strand, within Synpcc7942_0628at 621.716 kb on - strand, within Synpcc7942_0628at 621.821 kb on + strand, within Synpcc7942_0628at 621.885 kb on + strand, within Synpcc7942_0628at 621.930 kb on + strand, within Synpcc7942_0628at 621.995 kb on + strand, within Synpcc7942_0628at 622.093 kb on - strandat 622.113 kb on + strandat 622.122 kb on - strandat 622.126 kb on + strandat 622.140 kb on - strandat 622.163 kb on + strand, within Synpcc7942_0629at 622.175 kb on - strand, within Synpcc7942_0629at 622.200 kb on + strand, within Synpcc7942_0629at 622.209 kb on + strand, within Synpcc7942_0629at 622.216 kb on + strand, within Synpcc7942_0629at 622.217 kb on - strand, within Synpcc7942_0629at 622.217 kb on - strand, within Synpcc7942_0629at 622.221 kb on + strand, within Synpcc7942_0629at 622.222 kb on - strand, within Synpcc7942_0629at 622.227 kb on - strand, within Synpcc7942_0629at 622.250 kb on - strandat 622.262 kb on + strand, within Synpcc7942_0629at 622.264 kb on + strand, within Synpcc7942_0629at 622.272 kb on + strand, within Synpcc7942_0629at 622.280 kb on - strand, within Synpcc7942_0629at 622.310 kb on + strand, within Synpcc7942_0629at 622.335 kb on + strandat 622.346 kb on + strandat 622.377 kb on - strandat 622.426 kb on + strandat 622.439 kb on + strandat 622.449 kb on + strandat 622.449 kb on + strandat 622.449 kb on + strandat 622.467 kb on - strandat 622.479 kb on + strandat 622.500 kb on - strandat 622.512 kb on - strandat 622.526 kb on - strandat 622.553 kb on + strand, within Synpcc7942_0630at 622.556 kb on - strand, within Synpcc7942_0630at 622.676 kb on + strand, within Synpcc7942_0630at 622.684 kb on - strandat 622.708 kb on + strand, within Synpcc7942_0630at 622.708 kb on + strand, within Synpcc7942_0630at 622.708 kb on + strand, within Synpcc7942_0630at 622.715 kb on + strand, within Synpcc7942_0630at 622.716 kb on - strand, within Synpcc7942_0630at 622.729 kb on - strand, within Synpcc7942_0630at 622.742 kb on + strand, within Synpcc7942_0630at 622.750 kb on - strand, within Synpcc7942_0630at 622.761 kb on - strand, within Synpcc7942_0630at 622.766 kb on + strand, within Synpcc7942_0630at 622.766 kb on - strand, within Synpcc7942_0630at 622.778 kb on + strand, within Synpcc7942_0630at 622.788 kb on + strand, within Synpcc7942_0630at 622.788 kb on + strand, within Synpcc7942_0630at 622.808 kb on - strand, within Synpcc7942_0630at 622.808 kb on - strand, within Synpcc7942_0630at 622.812 kb on + strand, within Synpcc7942_0630at 622.840 kb on + strand, within Synpcc7942_0630at 622.842 kb on + strand, within Synpcc7942_0630at 622.843 kb on - strand, within Synpcc7942_0630at 622.847 kb on + strand, within Synpcc7942_0630at 622.855 kb on - strand, within Synpcc7942_0630at 622.872 kb on - strand, within Synpcc7942_0630at 622.881 kb on + strand, within Synpcc7942_0630at 622.942 kb on + strand, within Synpcc7942_0630at 622.944 kb on + strand, within Synpcc7942_0630at 622.975 kb on + strand, within Synpcc7942_0630at 622.975 kb on - strand, within Synpcc7942_0630at 622.998 kb on - strand, within Synpcc7942_0630at 623.025 kb on - strand, within Synpcc7942_0630at 623.045 kb on + strand, within Synpcc7942_0630at 623.049 kb on + strand, within Synpcc7942_0630at 623.069 kb on + strand, within Synpcc7942_0630at 623.118 kb on + strand, within Synpcc7942_0630

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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620,283 - +1.1
620,288 - +2.2
620,438 + -1.6
620,451 - -0.9
620,467 - -0.0
620,570 + Synpcc7942_0627 0.14 -1.4
620,574 + Synpcc7942_0627 0.15 -2.3
620,586 + Synpcc7942_0627 0.16 -1.7
620,594 - Synpcc7942_0627 0.17 -2.7
620,594 - Synpcc7942_0627 0.17 -0.8
620,629 + Synpcc7942_0627 0.22 -2.1
620,629 + Synpcc7942_0627 0.22 -1.2
620,629 + Synpcc7942_0627 0.22 -1.0
620,629 + Synpcc7942_0627 0.22 -1.9
620,629 + Synpcc7942_0627 0.22 -1.6
620,637 - Synpcc7942_0627 0.23 -1.2
620,637 - Synpcc7942_0627 0.23 -2.4
620,657 + Synpcc7942_0627 0.25 -0.9
620,686 + Synpcc7942_0627 0.29 -2.4
620,694 - Synpcc7942_0627 0.30 -0.6
620,708 - Synpcc7942_0627 0.32 -1.5
620,710 - Synpcc7942_0627 0.32 +0.6
620,731 - Synpcc7942_0627 0.35 -1.0
620,745 + Synpcc7942_0627 0.37 -1.7
620,753 - Synpcc7942_0627 0.38 -1.1
620,807 - Synpcc7942_0627 0.45 -1.9
620,811 + Synpcc7942_0627 0.46 -0.3
620,835 - Synpcc7942_0627 0.49 -0.6
620,878 - Synpcc7942_0627 0.54 -1.8
620,924 - Synpcc7942_0627 0.60 -1.4
620,953 - Synpcc7942_0627 0.64 -1.5
620,993 - Synpcc7942_0627 0.69 -1.0
621,078 - Synpcc7942_0627 0.81 -1.5
621,106 + Synpcc7942_0627 0.84 -2.1
621,106 - Synpcc7942_0627 0.84 -1.8
621,111 - Synpcc7942_0627 0.85 -1.6
621,175 + +0.4
621,212 + -2.0
621,223 + -0.6
621,228 - +0.5
621,233 + -0.0
621,235 + +0.3
621,240 + +0.2
621,243 - -0.5
621,248 - +0.3
621,248 - +0.4
621,248 - +0.1
621,251 + +0.2
621,256 + +0.6
621,259 - +0.5
621,261 + +0.6
621,274 + -0.9
621,352 - +2.0
621,657 + Synpcc7942_0628 0.44 -0.8
621,704 + Synpcc7942_0628 0.50 +0.3
621,712 - Synpcc7942_0628 0.51 +0.4
621,716 - Synpcc7942_0628 0.51 -0.4
621,821 + Synpcc7942_0628 0.63 -1.0
621,885 + Synpcc7942_0628 0.71 -1.0
621,930 + Synpcc7942_0628 0.76 -1.4
621,995 + Synpcc7942_0628 0.83 -0.6
622,093 - +2.0
622,113 + -1.5
622,122 - -0.0
622,126 + +1.3
622,140 - +1.6
622,163 + Synpcc7942_0629 0.14 +2.0
622,175 - Synpcc7942_0629 0.20 -0.0
622,200 + Synpcc7942_0629 0.32 -0.5
622,209 + Synpcc7942_0629 0.36 +1.4
622,216 + Synpcc7942_0629 0.40 -0.5
622,217 - Synpcc7942_0629 0.40 -0.3
622,217 - Synpcc7942_0629 0.40 -0.4
622,221 + Synpcc7942_0629 0.42 +0.0
622,222 - Synpcc7942_0629 0.43 +0.1
622,227 - Synpcc7942_0629 0.45 +0.3
622,250 - +0.6
622,262 + Synpcc7942_0629 0.62 +2.2
622,264 + Synpcc7942_0629 0.63 -0.1
622,272 + Synpcc7942_0629 0.67 -1.0
622,280 - Synpcc7942_0629 0.71 -0.5
622,310 + Synpcc7942_0629 0.85 +0.9
622,335 + -0.6
622,346 + -0.3
622,377 - -0.1
622,426 + -2.2
622,439 + -0.5
622,449 + -1.0
622,449 + +0.3
622,449 + -0.2
622,467 - -2.0
622,479 + -0.7
622,500 - -0.1
622,512 - +0.7
622,526 - +1.0
622,553 + Synpcc7942_0630 0.11 -0.8
622,556 - Synpcc7942_0630 0.11 -0.5
622,676 + Synpcc7942_0630 0.21 -0.0
622,684 - +0.4
622,708 + Synpcc7942_0630 0.24 -1.8
622,708 + Synpcc7942_0630 0.24 +0.6
622,708 + Synpcc7942_0630 0.24 -0.1
622,715 + Synpcc7942_0630 0.25 -0.7
622,716 - Synpcc7942_0630 0.25 +1.4
622,729 - Synpcc7942_0630 0.26 +0.7
622,742 + Synpcc7942_0630 0.27 -0.7
622,750 - Synpcc7942_0630 0.28 -0.1
622,761 - Synpcc7942_0630 0.29 -0.2
622,766 + Synpcc7942_0630 0.29 -0.7
622,766 - Synpcc7942_0630 0.29 +0.5
622,778 + Synpcc7942_0630 0.30 +0.5
622,788 + Synpcc7942_0630 0.31 -0.3
622,788 + Synpcc7942_0630 0.31 -2.3
622,808 - Synpcc7942_0630 0.33 +0.5
622,808 - Synpcc7942_0630 0.33 +1.6
622,812 + Synpcc7942_0630 0.33 -0.2
622,840 + Synpcc7942_0630 0.36 -0.2
622,842 + Synpcc7942_0630 0.36 +0.4
622,843 - Synpcc7942_0630 0.36 +0.7
622,847 + Synpcc7942_0630 0.36 -0.1
622,855 - Synpcc7942_0630 0.37 +0.9
622,872 - Synpcc7942_0630 0.38 -0.0
622,881 + Synpcc7942_0630 0.39 -0.8
622,942 + Synpcc7942_0630 0.45 +0.5
622,944 + Synpcc7942_0630 0.45 -0.9
622,975 + Synpcc7942_0630 0.48 -0.7
622,975 - Synpcc7942_0630 0.48 -2.1
622,998 - Synpcc7942_0630 0.50 +0.3
623,025 - Synpcc7942_0630 0.52 -0.8
623,045 + Synpcc7942_0630 0.54 -1.9
623,049 + Synpcc7942_0630 0.54 -1.3
623,069 + Synpcc7942_0630 0.56 -0.8
623,118 + Synpcc7942_0630 0.60 -0.5

Or see this region's nucleotide sequence