Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0453 and cobS overlap by 20 nucleotides cobS and tgt are separated by 28 nucleotides tgt and psbK are separated by 53 nucleotides psbK and Synpcc7942_0457 are separated by 215 nucleotides
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Synpcc7942_0454: cobS - cobalamin synthase, at 443,217 to 443,972
cobS
Synpcc7942_0455: tgt - queuine tRNA-ribosyltransferase, at 444,001 to 445,155
tgt
Synpcc7942_0456: psbK - photosystem II reaction center protein PsbK precursor, at 445,209 to 445,346
psbK
Synpcc7942_0457: Synpcc7942_0457 - hypothetical protein, at 445,562 to 446,179
_0457
Position (kb) 444
445
446 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 443.209 kb on + strand at 443.215 kb on + strand at 443.215 kb on + strand at 443.953 kb on + strand at 443.953 kb on + strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.981 kb on + strand at 444.004 kb on + strand at 444.017 kb on - strand at 444.042 kb on + strand at 444.042 kb on - strand at 444.070 kb on + strand at 444.073 kb on - strand at 444.073 kb on - strand at 444.096 kb on - strand at 444.107 kb on + strand at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.221 kb on - strand, within tgt at 444.238 kb on + strand, within tgt at 444.246 kb on + strand, within tgt at 444.246 kb on - strand, within tgt at 444.255 kb on - strand, within tgt at 444.274 kb on - strand, within tgt at 444.293 kb on + strand, within tgt at 444.301 kb on - strand, within tgt at 444.334 kb on - strand, within tgt at 444.345 kb on + strand, within tgt at 444.358 kb on - strand, within tgt at 444.358 kb on - strand, within tgt at 444.360 kb on - strand, within tgt at 444.382 kb on + strand, within tgt at 444.382 kb on + strand, within tgt at 444.390 kb on - strand, within tgt at 444.464 kb on - strand, within tgt at 444.483 kb on + strand, within tgt at 444.503 kb on - strand, within tgt at 444.533 kb on - strand, within tgt at 444.576 kb on - strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.738 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.757 kb on - strand, within tgt at 444.773 kb on + strand, within tgt at 444.796 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.871 kb on - strand, within tgt at 444.902 kb on + strand, within tgt at 444.948 kb on + strand, within tgt at 445.014 kb on + strand, within tgt at 445.022 kb on - strand, within tgt at 445.092 kb on - strand at 445.116 kb on + strand at 445.129 kb on - strand at 445.129 kb on - strand at 445.148 kb on - strand at 445.208 kb on + strand at 445.218 kb on + strand at 445.293 kb on - strand, within psbK at 445.349 kb on - strand at 445.356 kb on - strand at 445.364 kb on - strand at 445.395 kb on + strand at 445.446 kb on - strand at 445.573 kb on - strand at 445.583 kb on + strand at 445.593 kb on + strand at 445.601 kb on - strand at 445.641 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.675 kb on + strand at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.681 kb on + strand, within Synpcc7942_0457 at 445.686 kb on + strand, within Synpcc7942_0457 at 445.689 kb on - strand, within Synpcc7942_0457 at 445.691 kb on - strand, within Synpcc7942_0457 at 445.755 kb on + strand, within Synpcc7942_0457 at 445.763 kb on - strand, within Synpcc7942_0457 at 445.771 kb on + strand, within Synpcc7942_0457 at 445.783 kb on + strand, within Synpcc7942_0457 at 445.790 kb on + strand, within Synpcc7942_0457 at 445.798 kb on - strand, within Synpcc7942_0457 at 445.799 kb on - strand, within Synpcc7942_0457 at 445.806 kb on + strand, within Synpcc7942_0457 at 445.814 kb on - strand, within Synpcc7942_0457 at 445.832 kb on + strand, within Synpcc7942_0457 at 445.874 kb on - strand, within Synpcc7942_0457 at 445.897 kb on + strand, within Synpcc7942_0457 at 445.900 kb on - strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.938 kb on + strand, within Synpcc7942_0457 at 445.941 kb on - strand, within Synpcc7942_0457 at 445.951 kb on - strand, within Synpcc7942_0457 at 445.988 kb on - strand, within Synpcc7942_0457 at 446.071 kb on + strand, within Synpcc7942_0457 at 446.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 443,209 + -0.3 443,215 + +0.5 443,215 + -1.6 443,953 + -0.7 443,953 + -0.2 443,961 - +1.1 443,961 - +0.4 443,961 - -0.8 443,961 - -1.4 443,961 - +0.8 443,961 - -0.6 443,961 - -0.8 443,961 - -0.1 443,961 - -0.0 443,981 + -0.5 444,004 + -0.2 444,017 - +0.1 444,042 + -0.8 444,042 - -0.1 444,070 + +0.4 444,073 - -2.7 444,073 - -1.7 444,096 - +0.6 444,107 + -1.3 444,207 + tgt Synpcc7942_0455 0.18 -1.7 444,207 + tgt Synpcc7942_0455 0.18 -1.7 444,207 + tgt Synpcc7942_0455 0.18 -1.2 444,207 + tgt Synpcc7942_0455 0.18 -0.6 444,215 - tgt Synpcc7942_0455 0.19 -1.2 444,215 - tgt Synpcc7942_0455 0.19 -1.8 444,215 - tgt Synpcc7942_0455 0.19 -1.7 444,221 - tgt Synpcc7942_0455 0.19 -2.9 444,238 + tgt Synpcc7942_0455 0.21 -1.0 444,246 + tgt Synpcc7942_0455 0.21 -0.8 444,246 - tgt Synpcc7942_0455 0.21 +2.0 444,255 - tgt Synpcc7942_0455 0.22 -1.8 444,274 - tgt Synpcc7942_0455 0.24 -1.7 444,293 + tgt Synpcc7942_0455 0.25 -3.0 444,301 - tgt Synpcc7942_0455 0.26 -1.5 444,334 - tgt Synpcc7942_0455 0.29 -2.7 444,345 + tgt Synpcc7942_0455 0.30 -1.0 444,358 - tgt Synpcc7942_0455 0.31 +1.0 444,358 - tgt Synpcc7942_0455 0.31 -0.8 444,360 - tgt Synpcc7942_0455 0.31 -0.8 444,382 + tgt Synpcc7942_0455 0.33 -1.3 444,382 + tgt Synpcc7942_0455 0.33 -0.6 444,390 - tgt Synpcc7942_0455 0.34 -2.0 444,464 - tgt Synpcc7942_0455 0.40 -0.0 444,483 + tgt Synpcc7942_0455 0.42 -2.3 444,503 - tgt Synpcc7942_0455 0.43 -1.1 444,533 - tgt Synpcc7942_0455 0.46 -1.5 444,576 - tgt Synpcc7942_0455 0.50 -1.5 444,595 + tgt Synpcc7942_0455 0.51 -2.2 444,595 + tgt Synpcc7942_0455 0.51 +0.4 444,595 + tgt Synpcc7942_0455 0.51 -1.9 444,595 + tgt Synpcc7942_0455 0.51 -1.5 444,603 - tgt Synpcc7942_0455 0.52 +0.4 444,603 - tgt Synpcc7942_0455 0.52 -0.0 444,603 - tgt Synpcc7942_0455 0.52 -0.0 444,603 - tgt Synpcc7942_0455 0.52 -1.5 444,738 + tgt Synpcc7942_0455 0.64 -1.8 444,749 + tgt Synpcc7942_0455 0.65 -1.5 444,749 + tgt Synpcc7942_0455 0.65 -1.0 444,749 + tgt Synpcc7942_0455 0.65 -1.8 444,757 - tgt Synpcc7942_0455 0.65 -1.5 444,773 + tgt Synpcc7942_0455 0.67 -2.3 444,796 + tgt Synpcc7942_0455 0.69 -0.2 444,858 + tgt Synpcc7942_0455 0.74 -1.2 444,858 + tgt Synpcc7942_0455 0.74 -0.2 444,871 - tgt Synpcc7942_0455 0.75 -3.2 444,902 + tgt Synpcc7942_0455 0.78 -4.2 444,948 + tgt Synpcc7942_0455 0.82 -1.7 445,014 + tgt Synpcc7942_0455 0.88 -2.0 445,022 - tgt Synpcc7942_0455 0.88 -1.3 445,092 - -0.8 445,116 + -0.0 445,129 - +0.5 445,129 - +0.4 445,148 - -0.5 445,208 + -0.3 445,218 + +0.2 445,293 - psbK Synpcc7942_0456 0.61 -0.2 445,349 - +0.3 445,356 - -0.8 445,364 - -0.1 445,395 + +0.4 445,446 - +0.5 445,573 - -0.5 445,583 + -1.0 445,593 + -1.3 445,601 - -0.7 445,641 + Synpcc7942_0457 0.13 +1.2 445,670 + Synpcc7942_0457 0.17 -0.6 445,670 + -0.6 445,670 + Synpcc7942_0457 0.17 +0.2 445,670 + Synpcc7942_0457 0.17 +0.2 445,675 + +1.0 445,678 - Synpcc7942_0457 0.19 -1.3 445,678 - Synpcc7942_0457 0.19 -0.1 445,678 - Synpcc7942_0457 0.19 +1.4 445,678 - Synpcc7942_0457 0.19 +0.4 445,681 + Synpcc7942_0457 0.19 -0.5 445,686 + Synpcc7942_0457 0.20 -0.3 445,689 - Synpcc7942_0457 0.21 -1.0 445,691 - Synpcc7942_0457 0.21 +0.0 445,755 + Synpcc7942_0457 0.31 -1.1 445,763 - Synpcc7942_0457 0.33 +0.5 445,771 + Synpcc7942_0457 0.34 +0.2 445,783 + Synpcc7942_0457 0.36 +2.6 445,790 + Synpcc7942_0457 0.37 -0.5 445,798 - Synpcc7942_0457 0.38 +1.4 445,799 - Synpcc7942_0457 0.38 -0.2 445,806 + Synpcc7942_0457 0.39 +1.0 445,814 - Synpcc7942_0457 0.41 +0.2 445,832 + Synpcc7942_0457 0.44 +0.7 445,874 - Synpcc7942_0457 0.50 +0.1 445,897 + Synpcc7942_0457 0.54 -0.6 445,900 - Synpcc7942_0457 0.55 -1.1 445,933 + Synpcc7942_0457 0.60 -2.8 445,933 + Synpcc7942_0457 0.60 -0.9 445,933 + Synpcc7942_0457 0.60 -0.6 445,938 + Synpcc7942_0457 0.61 +0.1 445,941 - Synpcc7942_0457 0.61 +0.4 445,951 - Synpcc7942_0457 0.63 +2.6 445,988 - Synpcc7942_0457 0.69 -0.0 446,071 + Synpcc7942_0457 0.82 +0.1 446,120 + +0.4
Or see this region's nucleotide sequence