Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dfp and Synpcc7942_0293 overlap by 4 nucleotides Synpcc7942_0293 and psbO are separated by 298 nucleotides psbO and sat are separated by 189 nucleotides
Synpcc7942_0292: dfp - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 288,534 to 289,760
dfp
Synpcc7942_0293: Synpcc7942_0293 - hypothetical protein, at 289,757 to 290,095
_0293
Synpcc7942_0294: psbO - photosystem II manganese-stabilizing polypeptide, at 290,394 to 291,227
psbO
Synpcc7942_0295: sat - sulfate adenylyltransferase, at 291,417 to 292,604
sat
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1 at 289.837 kb on - strand, within Synpcc7942_0293 at 289.848 kb on - strand, within Synpcc7942_0293 at 289.848 kb on - strand, within Synpcc7942_0293 at 289.853 kb on - strand, within Synpcc7942_0293 at 289.858 kb on - strand, within Synpcc7942_0293 at 289.866 kb on + strand, within Synpcc7942_0293 at 289.885 kb on - strand, within Synpcc7942_0293 at 289.886 kb on + strand, within Synpcc7942_0293 at 289.886 kb on + strand, within Synpcc7942_0293 at 289.889 kb on + strand, within Synpcc7942_0293 at 289.894 kb on - strand, within Synpcc7942_0293 at 289.910 kb on + strand, within Synpcc7942_0293 at 289.935 kb on + strand, within Synpcc7942_0293 at 289.944 kb on + strand, within Synpcc7942_0293 at 289.984 kb on + strand, within Synpcc7942_0293 at 289.984 kb on - strand, within Synpcc7942_0293 at 290.028 kb on + strand, within Synpcc7942_0293 at 290.095 kb on + strand at 290.103 kb on - strand at 290.103 kb on - strand at 290.143 kb on + strand at 290.154 kb on + strand at 290.154 kb on + strand at 290.162 kb on - strand at 290.162 kb on - strand at 290.169 kb on + strand at 290.172 kb on - strand at 290.177 kb on - strand at 290.517 kb on + strand, within psbO at 290.871 kb on - strand, within psbO at 290.989 kb on - strand, within psbO at 291.223 kb on - strand at 291.254 kb on - strand at 291.260 kb on + strand at 291.266 kb on + strand at 291.362 kb on - strand at 291.402 kb on + strand at 291.451 kb on - strand at 292.079 kb on + strand, within sat at 292.089 kb on + strand, within sat
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 289,837 - Synpcc7942_0293 0.24 -1.0 289,848 - Synpcc7942_0293 0.27 +0.3 289,848 - Synpcc7942_0293 0.27 +0.0 289,853 - Synpcc7942_0293 0.28 -0.3 289,858 - Synpcc7942_0293 0.30 -1.5 289,866 + Synpcc7942_0293 0.32 -0.5 289,885 - Synpcc7942_0293 0.38 -0.5 289,886 + Synpcc7942_0293 0.38 +0.0 289,886 + Synpcc7942_0293 0.38 -1.3 289,889 + Synpcc7942_0293 0.39 +0.3 289,894 - Synpcc7942_0293 0.40 +0.2 289,910 + Synpcc7942_0293 0.45 -0.5 289,935 + Synpcc7942_0293 0.53 +0.5 289,944 + Synpcc7942_0293 0.55 -0.5 289,984 + Synpcc7942_0293 0.67 +0.4 289,984 - Synpcc7942_0293 0.67 -0.0 290,028 + Synpcc7942_0293 0.80 +0.9 290,095 + +0.1 290,103 - +0.9 290,103 - +0.1 290,143 + -0.3 290,154 + -0.8 290,154 + -0.5 290,162 - -0.3 290,162 - -0.5 290,169 + +0.2 290,172 - -0.8 290,177 - +0.8 290,517 + psbO Synpcc7942_0294 0.15 +0.1 290,871 - psbO Synpcc7942_0294 0.57 +0.6 290,989 - psbO Synpcc7942_0294 0.71 -0.9 291,223 - -0.1 291,254 - +0.5 291,260 + +0.2 291,266 + +0.6 291,362 - -1.0 291,402 + +0.1 291,451 - -0.1 292,079 + sat Synpcc7942_0295 0.56 -1.1 292,089 + sat Synpcc7942_0295 0.57 +0.9
Or see this region's nucleotide sequence