Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0163 and Synpcc7942_0164 are separated by 37 nucleotides Synpcc7942_0164 and ycf36 are separated by 18 nucleotides ycf36 and Synpcc7942_0166 overlap by 4 nucleotides Synpcc7942_0166 and tRNA-Met are separated by 95 nucleotides tRNA-Met and Synpcc7942_0167 are separated by 86 nucleotides Synpcc7942_0167 and Synpcc7942_0168 are separated by 139 nucleotides
Synpcc7942_0163: Synpcc7942_0163 - hypothetical protein, at 163,761 to 164,510
_0163
Synpcc7942_0164: Synpcc7942_0164 - Iojap-related protein, at 164,548 to 164,967
_0164
Synpcc7942_0165: ycf36 - hypothetical protein, at 164,986 to 165,486
ycf36
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Synpcc7942_R0028: tRNA-Met - tRNA-Met, at 166,532 to 166,608
tRNA-Met
Synpcc7942_0167: Synpcc7942_0167 - hypothetical protein, at 166,695 to 166,925
_0167
Synpcc7942_0168: Synpcc7942_0168 - hypothetical protein, at 167,065 to 167,748
_0168
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 164.484 kb on - strand at 164.497 kb on - strand at 164.499 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.510 kb on + strand at 164.513 kb on - strand at 164.517 kb on + strand at 164.525 kb on - strand at 164.551 kb on + strand at 164.551 kb on + strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.598 kb on + strand, within Synpcc7942_0164 at 164.598 kb on + strand, within Synpcc7942_0164 at 164.601 kb on - strand, within Synpcc7942_0164 at 164.607 kb on - strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.676 kb on + strand, within Synpcc7942_0164 at 164.795 kb on + strand, within Synpcc7942_0164 at 164.803 kb on - strand, within Synpcc7942_0164 at 164.816 kb on + strand, within Synpcc7942_0164 at 164.824 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand at 164.832 kb on - strand, within Synpcc7942_0164 at 164.914 kb on - strand, within Synpcc7942_0164 at 164.939 kb on + strand at 164.954 kb on + strand at 164.994 kb on + strand at 165.029 kb on - strand at 165.035 kb on + strand at 165.051 kb on - strand, within ycf36 at 165.069 kb on + strand, within ycf36 at 165.072 kb on - strand, within ycf36 at 165.090 kb on - strand at 165.090 kb on - strand, within ycf36 at 165.093 kb on + strand, within ycf36 at 165.096 kb on - strand, within ycf36 at 165.098 kb on + strand, within ycf36 at 165.100 kb on - strand, within ycf36 at 165.105 kb on + strand, within ycf36 at 165.113 kb on + strand, within ycf36 at 165.113 kb on - strand, within ycf36 at 165.118 kb on + strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.137 kb on - strand, within ycf36 at 165.142 kb on - strand, within ycf36 at 165.178 kb on + strand, within ycf36 at 165.179 kb on + strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.195 kb on + strand, within ycf36 at 165.209 kb on + strand, within ycf36 at 165.254 kb on - strand, within ycf36 at 165.288 kb on + strand, within ycf36 at 165.296 kb on - strand, within ycf36 at 165.312 kb on - strand, within ycf36 at 165.367 kb on + strand, within ycf36 at 165.452 kb on - strand at 165.468 kb on + strand at 165.508 kb on - strand at 165.593 kb on - strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.618 kb on + strand, within Synpcc7942_0166 at 165.634 kb on - strand, within Synpcc7942_0166 at 165.655 kb on - strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.674 kb on + strand, within Synpcc7942_0166 at 165.688 kb on - strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166 at 166.021 kb on + strand, within Synpcc7942_0166 at 166.029 kb on + strand, within Synpcc7942_0166 at 166.067 kb on + strand, within Synpcc7942_0166 at 166.075 kb on - strand, within Synpcc7942_0166 at 166.087 kb on - strand, within Synpcc7942_0166 at 166.104 kb on - strand, within Synpcc7942_0166 at 166.121 kb on + strand, within Synpcc7942_0166 at 166.157 kb on + strand, within Synpcc7942_0166 at 166.173 kb on + strand, within Synpcc7942_0166 at 166.184 kb on + strand, within Synpcc7942_0166 at 166.227 kb on + strand, within Synpcc7942_0166 at 166.247 kb on - strand, within Synpcc7942_0166 at 166.252 kb on - strand, within Synpcc7942_0166 at 166.254 kb on + strand, within Synpcc7942_0166 at 166.274 kb on + strand, within Synpcc7942_0166 at 166.369 kb on - strand at 166.376 kb on + strand at 166.383 kb on + strand at 166.384 kb on + strand at 166.419 kb on + strand at 166.425 kb on + strand at 166.427 kb on - strand at 166.433 kb on - strand at 166.438 kb on - strand at 166.662 kb on - strand at 166.677 kb on - strand at 166.690 kb on + strand at 166.692 kb on + strand at 166.700 kb on - strand at 166.720 kb on + strand, within Synpcc7942_0167 at 166.720 kb on + strand, within Synpcc7942_0167 at 166.728 kb on - strand, within Synpcc7942_0167 at 166.738 kb on - strand, within Synpcc7942_0167 at 166.784 kb on - strand, within Synpcc7942_0167 at 166.837 kb on + strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.871 kb on + strand, within Synpcc7942_0167 at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.935 kb on - strand at 166.935 kb on - strand at 166.949 kb on + strand at 166.949 kb on + strand at 166.954 kb on + strand at 166.962 kb on - strand at 166.972 kb on - strand at 166.979 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.022 kb on + strand at 167.023 kb on - strand at 167.033 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.085 kb on + strand at 167.085 kb on + strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.093 kb on - strand at 167.093 kb on - strand at 167.163 kb on - strand, within Synpcc7942_0168 at 167.178 kb on + strand, within Synpcc7942_0168 at 167.185 kb on - strand, within Synpcc7942_0168 at 167.205 kb on + strand, within Synpcc7942_0168 at 167.224 kb on - strand, within Synpcc7942_0168 at 167.241 kb on + strand, within Synpcc7942_0168 at 167.249 kb on + strand, within Synpcc7942_0168 at 167.249 kb on - strand, within Synpcc7942_0168 at 167.257 kb on - strand, within Synpcc7942_0168 at 167.278 kb on - strand, within Synpcc7942_0168 at 167.285 kb on + strand, within Synpcc7942_0168 at 167.312 kb on + strand at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.425 kb on + strand, within Synpcc7942_0168 at 167.432 kb on + strand, within Synpcc7942_0168
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 164,484 - -0.1 164,497 - -1.3 164,499 + -0.3 164,500 + -0.2 164,500 + -1.9 164,500 + -0.0 164,500 + -1.0 164,500 + +1.1 164,500 + -0.6 164,508 - -0.5 164,508 - +0.3 164,508 - +0.2 164,510 + -0.1 164,513 - -1.4 164,517 + +0.8 164,525 - -0.4 164,551 + -1.2 164,551 + +0.3 164,559 - -0.5 164,559 - +1.1 164,559 - -1.2 164,598 + Synpcc7942_0164 0.12 -0.9 164,598 + Synpcc7942_0164 0.12 -0.7 164,601 - Synpcc7942_0164 0.13 -0.7 164,607 - Synpcc7942_0164 0.14 -2.2 164,666 + Synpcc7942_0164 0.28 +0.5 164,666 + Synpcc7942_0164 0.28 +1.9 164,666 + Synpcc7942_0164 0.28 -0.4 164,674 - Synpcc7942_0164 0.30 -0.0 164,674 - Synpcc7942_0164 0.30 +0.6 164,676 + Synpcc7942_0164 0.30 +0.1 164,795 + Synpcc7942_0164 0.59 -0.8 164,803 - Synpcc7942_0164 0.61 -1.1 164,816 + Synpcc7942_0164 0.64 -1.2 164,824 - Synpcc7942_0164 0.66 -0.4 164,832 - Synpcc7942_0164 0.68 -1.3 164,832 - -0.4 164,832 - Synpcc7942_0164 0.68 -0.4 164,914 - Synpcc7942_0164 0.87 +0.1 164,939 + -0.9 164,954 + +0.1 164,994 + +0.4 165,029 - -1.1 165,035 + -0.3 165,051 - ycf36 Synpcc7942_0165 0.13 +0.0 165,069 + ycf36 Synpcc7942_0165 0.17 -1.8 165,072 - ycf36 Synpcc7942_0165 0.17 +0.1 165,090 - +1.9 165,090 - ycf36 Synpcc7942_0165 0.21 -1.3 165,093 + ycf36 Synpcc7942_0165 0.21 -0.4 165,096 - ycf36 Synpcc7942_0165 0.22 -0.2 165,098 + ycf36 Synpcc7942_0165 0.22 -0.2 165,100 - ycf36 Synpcc7942_0165 0.23 -0.5 165,105 + ycf36 Synpcc7942_0165 0.24 -0.7 165,113 + ycf36 Synpcc7942_0165 0.25 -1.3 165,113 - ycf36 Synpcc7942_0165 0.25 -0.2 165,118 + ycf36 Synpcc7942_0165 0.26 -1.0 165,126 - ycf36 Synpcc7942_0165 0.28 -0.3 165,126 - ycf36 Synpcc7942_0165 0.28 -0.4 165,126 - ycf36 Synpcc7942_0165 0.28 +0.7 165,137 - ycf36 Synpcc7942_0165 0.30 -0.5 165,142 - ycf36 Synpcc7942_0165 0.31 -1.8 165,178 + ycf36 Synpcc7942_0165 0.38 +0.5 165,179 + ycf36 Synpcc7942_0165 0.39 -2.7 165,186 - ycf36 Synpcc7942_0165 0.40 +0.1 165,186 - ycf36 Synpcc7942_0165 0.40 +0.5 165,186 - ycf36 Synpcc7942_0165 0.40 -0.4 165,195 + ycf36 Synpcc7942_0165 0.42 +0.8 165,209 + ycf36 Synpcc7942_0165 0.45 -0.7 165,254 - ycf36 Synpcc7942_0165 0.53 -1.8 165,288 + ycf36 Synpcc7942_0165 0.60 -0.7 165,296 - ycf36 Synpcc7942_0165 0.62 -1.3 165,312 - ycf36 Synpcc7942_0165 0.65 -2.2 165,367 + ycf36 Synpcc7942_0165 0.76 +0.3 165,452 - +0.1 165,468 + -1.0 165,508 - +0.3 165,593 - Synpcc7942_0166 0.12 -0.9 165,602 + Synpcc7942_0166 0.12 -1.7 165,602 + Synpcc7942_0166 0.12 +0.3 165,618 + Synpcc7942_0166 0.14 -1.1 165,634 - Synpcc7942_0166 0.16 -1.8 165,655 - Synpcc7942_0166 0.18 -0.1 165,662 + Synpcc7942_0166 0.19 +0.0 165,662 + Synpcc7942_0166 0.19 -1.1 165,674 + Synpcc7942_0166 0.20 -0.9 165,688 - Synpcc7942_0166 0.21 -1.2 165,697 + Synpcc7942_0166 0.22 -1.0 165,697 + Synpcc7942_0166 0.22 -0.5 165,705 - Synpcc7942_0166 0.23 -0.4 165,820 + Synpcc7942_0166 0.35 -1.4 165,834 - Synpcc7942_0166 0.37 -1.9 165,839 + Synpcc7942_0166 0.37 -1.4 165,846 + Synpcc7942_0166 0.38 -0.2 165,846 + Synpcc7942_0166 0.38 -0.8 165,852 + Synpcc7942_0166 0.39 -1.3 165,852 + Synpcc7942_0166 0.39 -0.4 165,852 + Synpcc7942_0166 0.39 -1.0 165,852 - Synpcc7942_0166 0.39 -1.5 165,855 - Synpcc7942_0166 0.39 -2.1 165,860 - Synpcc7942_0166 0.40 -1.7 165,892 + Synpcc7942_0166 0.43 +0.1 165,905 + Synpcc7942_0166 0.44 +0.3 166,021 + Synpcc7942_0166 0.56 -0.4 166,029 + Synpcc7942_0166 0.57 -0.2 166,067 + Synpcc7942_0166 0.61 -2.0 166,075 - Synpcc7942_0166 0.62 +0.6 166,087 - Synpcc7942_0166 0.63 +0.6 166,104 - Synpcc7942_0166 0.65 +1.7 166,121 + Synpcc7942_0166 0.67 -0.1 166,157 + Synpcc7942_0166 0.71 -1.0 166,173 + Synpcc7942_0166 0.72 -0.4 166,184 + Synpcc7942_0166 0.73 +0.5 166,227 + Synpcc7942_0166 0.78 -0.7 166,247 - Synpcc7942_0166 0.80 -1.1 166,252 - Synpcc7942_0166 0.81 +0.9 166,254 + Synpcc7942_0166 0.81 +0.6 166,274 + Synpcc7942_0166 0.83 -0.1 166,369 - -1.8 166,376 + -0.3 166,383 + +1.3 166,384 + -0.8 166,419 + -1.1 166,425 + -1.0 166,427 - -0.8 166,433 - +0.6 166,438 - -1.2 166,662 - -0.5 166,677 - -0.5 166,690 + -0.4 166,692 + +0.3 166,700 - +0.3 166,720 + Synpcc7942_0167 0.11 -0.7 166,720 + Synpcc7942_0167 0.11 +0.0 166,728 - Synpcc7942_0167 0.14 +0.2 166,738 - Synpcc7942_0167 0.19 -0.5 166,784 - Synpcc7942_0167 0.39 -1.0 166,837 + Synpcc7942_0167 0.61 -1.9 166,845 - Synpcc7942_0167 0.65 +1.7 166,845 - Synpcc7942_0167 0.65 -1.6 166,871 + Synpcc7942_0167 0.76 -0.3 166,927 + -0.6 166,927 + +0.2 166,927 + -0.6 166,935 - -0.8 166,935 - -0.4 166,949 + +1.5 166,949 + +0.2 166,954 + -0.2 166,962 - +0.3 166,972 - -0.8 166,979 - +0.0 167,005 + -0.1 167,005 + -0.1 167,005 + +0.4 167,005 + -0.6 167,005 + +1.1 167,005 + -1.1 167,013 - -0.2 167,013 - -1.9 167,013 - +1.9 167,013 - +0.9 167,022 + +0.9 167,023 - -1.0 167,033 + -1.2 167,080 + +3.2 167,080 + +3.2 167,080 + +3.5 167,080 + +3.8 167,080 + +2.6 167,080 + +3.8 167,080 + +2.4 167,085 + +4.0 167,085 + +3.1 167,088 - +1.7 167,088 - +2.3 167,088 - +2.9 167,088 - +2.6 167,093 - +1.7 167,093 - +1.2 167,163 - Synpcc7942_0168 0.14 +3.1 167,178 + Synpcc7942_0168 0.17 +3.6 167,185 - Synpcc7942_0168 0.18 +3.2 167,205 + Synpcc7942_0168 0.20 +3.5 167,224 - Synpcc7942_0168 0.23 +2.8 167,241 + Synpcc7942_0168 0.26 +2.8 167,249 + Synpcc7942_0168 0.27 +2.3 167,249 - Synpcc7942_0168 0.27 +3.4 167,257 - Synpcc7942_0168 0.28 +3.7 167,278 - Synpcc7942_0168 0.31 +3.0 167,285 + Synpcc7942_0168 0.32 +4.0 167,312 + +4.1 167,340 + Synpcc7942_0168 0.40 +3.1 167,340 + Synpcc7942_0168 0.40 +3.4 167,340 + Synpcc7942_0168 0.40 +3.5 167,380 - Synpcc7942_0168 0.46 +2.5 167,380 - Synpcc7942_0168 0.46 +3.3 167,425 + Synpcc7942_0168 0.53 +3.4 167,432 + Synpcc7942_0168 0.54 +3.5
Or see this region's nucleotide sequence