Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0148 and Synpcc7942_0149 overlap by 4 nucleotides Synpcc7942_0149 and Synpcc7942_0150 are separated by 7 nucleotides Synpcc7942_0150 and psfR are separated by 608 nucleotides
Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190
_0148
Synpcc7942_0149: Synpcc7942_0149 - methylated-DNA--protein-cysteine methyltransferase, at 150,187 to 150,744
_0149
Synpcc7942_0150: Synpcc7942_0150 - Dolichyl-phosphate beta-D-mannosyltransferase, at 150,752 to 151,918
_0150
Synpcc7942_0151: psfR - response regulator receiver modulated diguanylate cyclase, at 152,527 to 154,917
psfR
Position (kb) 150
151
152 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 150.185 kb on - strand at 150.191 kb on - strand at 150.214 kb on + strand at 150.224 kb on - strand at 150.241 kb on + strand at 150.258 kb on - strand, within Synpcc7942_0149 at 150.265 kb on + strand, within Synpcc7942_0149 at 150.275 kb on - strand, within Synpcc7942_0149 at 150.330 kb on + strand, within Synpcc7942_0149 at 150.338 kb on - strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.365 kb on + strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.392 kb on + strand, within Synpcc7942_0149 at 150.435 kb on + strand, within Synpcc7942_0149 at 150.440 kb on + strand, within Synpcc7942_0149 at 150.464 kb on - strand, within Synpcc7942_0149 at 150.465 kb on + strand, within Synpcc7942_0149 at 150.487 kb on + strand, within Synpcc7942_0149 at 150.649 kb on + strand, within Synpcc7942_0149 at 150.664 kb on - strand, within Synpcc7942_0149 at 150.671 kb on - strand, within Synpcc7942_0149 at 150.679 kb on - strand, within Synpcc7942_0149 at 150.699 kb on + strand at 150.748 kb on + strand at 150.796 kb on - strand at 150.951 kb on + strand, within Synpcc7942_0150 at 151.019 kb on - strand, within Synpcc7942_0150 at 151.039 kb on + strand, within Synpcc7942_0150 at 151.045 kb on - strand, within Synpcc7942_0150 at 151.079 kb on + strand, within Synpcc7942_0150 at 151.135 kb on + strand, within Synpcc7942_0150 at 151.165 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.175 kb on - strand, within Synpcc7942_0150 at 151.183 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.219 kb on + strand, within Synpcc7942_0150 at 151.273 kb on + strand, within Synpcc7942_0150 at 151.287 kb on + strand, within Synpcc7942_0150 at 151.323 kb on - strand, within Synpcc7942_0150 at 151.351 kb on + strand, within Synpcc7942_0150 at 151.351 kb on + strand, within Synpcc7942_0150 at 151.359 kb on - strand, within Synpcc7942_0150 at 151.359 kb on - strand, within Synpcc7942_0150 at 151.372 kb on - strand, within Synpcc7942_0150 at 151.373 kb on - strand, within Synpcc7942_0150 at 151.374 kb on + strand, within Synpcc7942_0150 at 151.393 kb on - strand, within Synpcc7942_0150 at 151.420 kb on + strand, within Synpcc7942_0150 at 151.420 kb on + strand, within Synpcc7942_0150 at 151.428 kb on - strand, within Synpcc7942_0150 at 151.428 kb on - strand, within Synpcc7942_0150 at 151.507 kb on - strand, within Synpcc7942_0150 at 151.524 kb on + strand, within Synpcc7942_0150 at 151.556 kb on + strand, within Synpcc7942_0150 at 151.616 kb on + strand, within Synpcc7942_0150 at 151.616 kb on + strand, within Synpcc7942_0150 at 151.624 kb on - strand, within Synpcc7942_0150 at 151.676 kb on - strand, within Synpcc7942_0150 at 151.683 kb on - strand, within Synpcc7942_0150 at 151.701 kb on + strand, within Synpcc7942_0150 at 151.703 kb on - strand, within Synpcc7942_0150 at 151.709 kb on - strand, within Synpcc7942_0150 at 151.721 kb on + strand, within Synpcc7942_0150 at 151.724 kb on - strand, within Synpcc7942_0150 at 151.729 kb on - strand, within Synpcc7942_0150 at 151.787 kb on + strand, within Synpcc7942_0150 at 151.832 kb on - strand at 151.933 kb on + strand at 151.933 kb on + strand at 151.941 kb on - strand at 151.941 kb on - strand at 151.957 kb on + strand at 151.988 kb on + strand at 151.988 kb on + strand at 151.988 kb on + strand at 151.996 kb on - strand at 151.996 kb on - strand at 151.996 kb on - strand at 152.001 kb on - strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.022 kb on + strand at 152.022 kb on + strand at 152.025 kb on - strand at 152.035 kb on - strand at 152.056 kb on + strand at 152.064 kb on - strand at 152.067 kb on - strand at 152.071 kb on + strand at 152.071 kb on + strand at 152.097 kb on + strand at 152.106 kb on - strand at 152.112 kb on - strand at 152.169 kb on - strand at 152.169 kb on - strand at 152.174 kb on - strand at 152.178 kb on + strand at 152.178 kb on + strand at 152.212 kb on + strand at 152.235 kb on + strand at 152.325 kb on + strand at 152.485 kb on - strand at 152.498 kb on + strand at 152.557 kb on + strand at 152.575 kb on - strand at 152.576 kb on + strand at 152.624 kb on + strand at 152.663 kb on - strand at 152.691 kb on - strand at 152.691 kb on - strand at 152.732 kb on + strand at 152.740 kb on - strand at 152.740 kb on - strand at 152.751 kb on - strand at 152.752 kb on - strand at 152.823 kb on + strand, within psfR at 152.850 kb on + strand, within psfR at 152.890 kb on + strand, within psfR at 152.909 kb on - strand, within psfR
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 150,185 - +1.2 150,191 - -0.1 150,214 + -0.6 150,224 - -0.4 150,241 + -0.2 150,258 - Synpcc7942_0149 0.13 +0.8 150,265 + Synpcc7942_0149 0.14 -1.2 150,275 - Synpcc7942_0149 0.16 -0.1 150,330 + Synpcc7942_0149 0.26 +0.6 150,338 - Synpcc7942_0149 0.27 +0.6 150,341 + Synpcc7942_0149 0.28 -0.3 150,341 + Synpcc7942_0149 0.28 +0.2 150,341 + Synpcc7942_0149 0.28 -0.8 150,341 + Synpcc7942_0149 0.28 -0.2 150,341 + Synpcc7942_0149 0.28 +0.5 150,341 + Synpcc7942_0149 0.28 +0.6 150,349 - Synpcc7942_0149 0.29 +0.2 150,349 - Synpcc7942_0149 0.29 -0.6 150,349 - Synpcc7942_0149 0.29 +0.9 150,349 - Synpcc7942_0149 0.29 +0.8 150,349 - Synpcc7942_0149 0.29 -2.0 150,349 - Synpcc7942_0149 0.29 +0.0 150,349 - Synpcc7942_0149 0.29 +0.3 150,349 - Synpcc7942_0149 0.29 +0.0 150,349 - Synpcc7942_0149 0.29 -0.3 150,349 - Synpcc7942_0149 0.29 -0.1 150,349 - Synpcc7942_0149 0.29 -0.6 150,365 + Synpcc7942_0149 0.32 -0.5 150,378 - Synpcc7942_0149 0.34 +0.6 150,378 - Synpcc7942_0149 0.34 -0.0 150,392 + Synpcc7942_0149 0.37 +0.4 150,435 + Synpcc7942_0149 0.44 +0.8 150,440 + Synpcc7942_0149 0.45 -0.1 150,464 - Synpcc7942_0149 0.50 -1.2 150,465 + Synpcc7942_0149 0.50 +0.6 150,487 + Synpcc7942_0149 0.54 +0.2 150,649 + Synpcc7942_0149 0.83 -0.6 150,664 - Synpcc7942_0149 0.85 +0.3 150,671 - Synpcc7942_0149 0.87 +0.3 150,679 - Synpcc7942_0149 0.88 -1.3 150,699 + +0.9 150,748 + -0.1 150,796 - -2.8 150,951 + Synpcc7942_0150 0.17 -2.6 151,019 - Synpcc7942_0150 0.23 -1.9 151,039 + Synpcc7942_0150 0.25 -0.3 151,045 - Synpcc7942_0150 0.25 -0.1 151,079 + Synpcc7942_0150 0.28 -2.4 151,135 + Synpcc7942_0150 0.33 +0.6 151,165 + Synpcc7942_0150 0.35 -3.7 151,167 + Synpcc7942_0150 0.36 -4.7 151,167 + Synpcc7942_0150 0.36 -4.0 151,167 + Synpcc7942_0150 0.36 -3.5 151,175 - Synpcc7942_0150 0.36 -4.7 151,183 - Synpcc7942_0150 0.37 -2.7 151,185 - Synpcc7942_0150 0.37 -2.4 151,185 - Synpcc7942_0150 0.37 -2.0 151,185 - Synpcc7942_0150 0.37 -2.7 151,219 + Synpcc7942_0150 0.40 -2.2 151,273 + Synpcc7942_0150 0.45 -4.9 151,287 + Synpcc7942_0150 0.46 -4.0 151,323 - Synpcc7942_0150 0.49 -3.1 151,351 + Synpcc7942_0150 0.51 -3.2 151,351 + Synpcc7942_0150 0.51 -2.7 151,359 - Synpcc7942_0150 0.52 -2.7 151,359 - Synpcc7942_0150 0.52 -1.7 151,372 - Synpcc7942_0150 0.53 -0.2 151,373 - Synpcc7942_0150 0.53 -1.2 151,374 + Synpcc7942_0150 0.53 -2.5 151,393 - Synpcc7942_0150 0.55 -2.5 151,420 + Synpcc7942_0150 0.57 +0.9 151,420 + Synpcc7942_0150 0.57 +1.3 151,428 - Synpcc7942_0150 0.58 -1.5 151,428 - Synpcc7942_0150 0.58 -3.6 151,507 - Synpcc7942_0150 0.65 -2.9 151,524 + Synpcc7942_0150 0.66 -2.4 151,556 + Synpcc7942_0150 0.69 -3.1 151,616 + Synpcc7942_0150 0.74 -1.2 151,616 + Synpcc7942_0150 0.74 -3.0 151,624 - Synpcc7942_0150 0.75 -3.0 151,676 - Synpcc7942_0150 0.79 -0.1 151,683 - Synpcc7942_0150 0.80 -4.6 151,701 + Synpcc7942_0150 0.81 -2.3 151,703 - Synpcc7942_0150 0.81 -3.6 151,709 - Synpcc7942_0150 0.82 -2.2 151,721 + Synpcc7942_0150 0.83 -1.9 151,724 - Synpcc7942_0150 0.83 -1.4 151,729 - Synpcc7942_0150 0.84 -3.5 151,787 + Synpcc7942_0150 0.89 -2.9 151,832 - -5.0 151,933 + +0.3 151,933 + -1.9 151,941 - -0.1 151,941 - -0.9 151,957 + -1.0 151,988 + -0.9 151,988 + +0.3 151,988 + +0.8 151,996 - +0.0 151,996 - -1.4 151,996 - +0.8 152,001 - -0.7 152,017 + -0.2 152,017 + +0.7 152,017 + -1.5 152,017 + +1.6 152,017 + -0.2 152,022 + +0.1 152,022 + -0.1 152,025 - -0.7 152,035 - +0.9 152,056 + +1.4 152,064 - +0.2 152,067 - -0.2 152,071 + +0.4 152,071 + -0.4 152,097 + -0.4 152,106 - -0.6 152,112 - -2.3 152,169 - -1.0 152,169 - -1.3 152,174 - +0.0 152,178 + -1.4 152,178 + -0.2 152,212 + -0.8 152,235 + -0.6 152,325 + +0.1 152,485 - -2.6 152,498 + -0.9 152,557 + +1.8 152,575 - +0.5 152,576 + +0.2 152,624 + +1.9 152,663 - +0.1 152,691 - -0.2 152,691 - -0.4 152,732 + +0.0 152,740 - -0.6 152,740 - -0.3 152,751 - -0.3 152,752 - -0.1 152,823 + psfR Synpcc7942_0151 0.12 -0.9 152,850 + psfR Synpcc7942_0151 0.14 -0.2 152,890 + psfR Synpcc7942_0151 0.15 -0.6 152,909 - psfR Synpcc7942_0151 0.16 -1.4
Or see this region's nucleotide sequence