Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23740

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS23735 and HSERO_RS23740 are separated by 95 nucleotidesHSERO_RS23740 and HSERO_RS23745 are separated by 2 nucleotides HSERO_RS23735: HSERO_RS23735 - phosphodiesterase, at 5,441,446 to 5,442,651 _RS23735 HSERO_RS23740: HSERO_RS23740 - blue-light sensor BLUF, at 5,442,747 to 5,443,172 _RS23740 HSERO_RS23745: HSERO_RS23745 - GTP cyclohydrolase, at 5,443,175 to 5,443,918 _RS23745 Position (kb) 5442 5443 5444Strain fitness (log2 ratio) -2 -1 0 1at 5441.762 kb on - strand, within HSERO_RS23735at 5441.795 kb on + strand, within HSERO_RS23735at 5441.827 kb on - strand, within HSERO_RS23735at 5442.003 kb on - strand, within HSERO_RS23735at 5442.125 kb on - strand, within HSERO_RS23735at 5442.226 kb on + strand, within HSERO_RS23735at 5442.242 kb on - strand, within HSERO_RS23735at 5442.242 kb on - strand, within HSERO_RS23735at 5442.310 kb on - strand, within HSERO_RS23735at 5442.310 kb on - strand, within HSERO_RS23735at 5442.506 kb on + strand, within HSERO_RS23735at 5443.015 kb on + strand, within HSERO_RS23740at 5443.073 kb on + strand, within HSERO_RS23740at 5443.081 kb on - strand, within HSERO_RS23740at 5443.119 kb on - strand, within HSERO_RS23740at 5443.133 kb on - strandat 5443.186 kb on + strandat 5444.028 kb on - strandat 5444.110 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
remove
5,441,762 - HSERO_RS23735 0.26 -1.6
5,441,795 + HSERO_RS23735 0.29 -0.3
5,441,827 - HSERO_RS23735 0.32 +0.2
5,442,003 - HSERO_RS23735 0.46 -0.6
5,442,125 - HSERO_RS23735 0.56 +0.5
5,442,226 + HSERO_RS23735 0.65 -0.5
5,442,242 - HSERO_RS23735 0.66 -0.6
5,442,242 - HSERO_RS23735 0.66 -0.2
5,442,310 - HSERO_RS23735 0.72 +0.9
5,442,310 - HSERO_RS23735 0.72 -0.6
5,442,506 + HSERO_RS23735 0.88 +0.4
5,443,015 + HSERO_RS23740 0.63 -0.2
5,443,073 + HSERO_RS23740 0.77 -1.4
5,443,081 - HSERO_RS23740 0.78 -1.9
5,443,119 - HSERO_RS23740 0.87 -2.1
5,443,133 - -0.4
5,443,186 + -0.6
5,444,028 - -0.7
5,444,110 - -1.7

Or see this region's nucleotide sequence