Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22685 and HSERO_RS22690 are separated by 166 nucleotides HSERO_RS22690 and HSERO_RS22695 are separated by 100 nucleotides
HSERO_RS22685: HSERO_RS22685 - allantoate amidohydrolase, at 5,202,541 to 5,203,794
_RS22685
HSERO_RS22690: HSERO_RS22690 - C4-dicarboxylate ABC transporter, at 5,203,961 to 5,205,295
_RS22690
HSERO_RS22695: HSERO_RS22695 - GntR family transcriptional regulator, at 5,205,396 to 5,206,082
_RS22695
Position (kb) 5203
5204
5205
5206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5202.969 kb on + strand, within HSERO_RS22685 at 5203.002 kb on + strand, within HSERO_RS22685 at 5203.182 kb on + strand, within HSERO_RS22685 at 5203.229 kb on - strand, within HSERO_RS22685 at 5203.371 kb on - strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.482 kb on - strand, within HSERO_RS22685 at 5203.525 kb on + strand, within HSERO_RS22685 at 5203.625 kb on + strand, within HSERO_RS22685 at 5203.675 kb on - strand at 5203.720 kb on + strand at 5203.728 kb on - strand at 5203.728 kb on - strand at 5203.744 kb on + strand at 5203.744 kb on + strand at 5203.802 kb on + strand at 5203.953 kb on + strand at 5203.953 kb on + strand at 5204.006 kb on - strand at 5204.006 kb on - strand at 5204.006 kb on - strand at 5204.040 kb on - strand at 5204.137 kb on - strand, within HSERO_RS22690 at 5204.277 kb on - strand, within HSERO_RS22690 at 5204.289 kb on + strand, within HSERO_RS22690 at 5204.306 kb on - strand, within HSERO_RS22690 at 5204.387 kb on + strand, within HSERO_RS22690 at 5204.441 kb on + strand, within HSERO_RS22690 at 5204.563 kb on - strand, within HSERO_RS22690 at 5204.990 kb on - strand, within HSERO_RS22690 at 5204.991 kb on - strand, within HSERO_RS22690 at 5204.998 kb on - strand, within HSERO_RS22690 at 5205.121 kb on + strand, within HSERO_RS22690 at 5205.284 kb on + strand at 5205.286 kb on + strand at 5205.617 kb on + strand, within HSERO_RS22695 at 5205.680 kb on - strand, within HSERO_RS22695 at 5205.835 kb on - strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5205.979 kb on + strand, within HSERO_RS22695 at 5206.042 kb on - strand at 5206.073 kb on + strand at 5206.104 kb on + strand at 5206.196 kb on + strand at 5206.266 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB remove 5,202,969 + HSERO_RS22685 0.34 -0.9 5,203,002 + HSERO_RS22685 0.37 -0.4 5,203,182 + HSERO_RS22685 0.51 -0.2 5,203,229 - HSERO_RS22685 0.55 -1.1 5,203,371 - HSERO_RS22685 0.66 -0.1 5,203,376 + HSERO_RS22685 0.67 -0.3 5,203,376 + HSERO_RS22685 0.67 -1.2 5,203,482 - HSERO_RS22685 0.75 -0.5 5,203,525 + HSERO_RS22685 0.78 +0.5 5,203,625 + HSERO_RS22685 0.86 -0.5 5,203,675 - -0.7 5,203,720 + +0.9 5,203,728 - +0.2 5,203,728 - -0.9 5,203,744 + -2.2 5,203,744 + -0.2 5,203,802 + +0.9 5,203,953 + +0.0 5,203,953 + -0.7 5,204,006 - +0.8 5,204,006 - +0.1 5,204,006 - +0.3 5,204,040 - +0.1 5,204,137 - HSERO_RS22690 0.13 -0.2 5,204,277 - HSERO_RS22690 0.24 -0.7 5,204,289 + HSERO_RS22690 0.25 -0.2 5,204,306 - HSERO_RS22690 0.26 +0.1 5,204,387 + HSERO_RS22690 0.32 +0.4 5,204,441 + HSERO_RS22690 0.36 -1.1 5,204,563 - HSERO_RS22690 0.45 -1.1 5,204,990 - HSERO_RS22690 0.77 -1.9 5,204,991 - HSERO_RS22690 0.77 +0.4 5,204,998 - HSERO_RS22690 0.78 +0.2 5,205,121 + HSERO_RS22690 0.87 +0.4 5,205,284 + -0.5 5,205,286 + +1.4 5,205,617 + HSERO_RS22695 0.32 -1.2 5,205,680 - HSERO_RS22695 0.41 -0.2 5,205,835 - HSERO_RS22695 0.64 +1.5 5,205,979 + HSERO_RS22695 0.85 +0.9 5,205,979 + HSERO_RS22695 0.85 +1.0 5,205,979 + HSERO_RS22695 0.85 +0.1 5,206,042 - +0.5 5,206,073 + +0.5 5,206,104 + +1.9 5,206,196 + -0.7 5,206,266 + +1.2
Or see this region's nucleotide sequence