Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21565 and HSERO_RS21570 are separated by 175 nucleotides HSERO_RS21570 and HSERO_RS21575 are separated by 19 nucleotides HSERO_RS21575 and HSERO_RS21580 are separated by 133 nucleotides
HSERO_RS21565: HSERO_RS21565 - chemotaxis protein CheW, at 4,935,284 to 4,937,797
_RS21565
HSERO_RS21570: HSERO_RS21570 - asparaginase, at 4,937,973 to 4,938,458
_RS21570
HSERO_RS21575: HSERO_RS21575 - transcriptional regulator, at 4,938,478 to 4,939,380
_RS21575
HSERO_RS21580: HSERO_RS21580 - membrane protein, at 4,939,514 to 4,940,563
_RS21580
Position (kb) 4938
4939
4940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4937.493 kb on - strand, within HSERO_RS21565 at 4937.504 kb on + strand, within HSERO_RS21565 at 4937.587 kb on + strand at 4937.616 kb on + strand at 4937.822 kb on + strand at 4937.850 kb on - strand at 4937.874 kb on - strand at 4937.921 kb on - strand at 4937.927 kb on + strand at 4937.927 kb on + strand at 4938.177 kb on - strand, within HSERO_RS21570 at 4938.187 kb on - strand, within HSERO_RS21570 at 4938.220 kb on + strand, within HSERO_RS21570 at 4938.243 kb on + strand, within HSERO_RS21570 at 4938.243 kb on + strand, within HSERO_RS21570 at 4938.246 kb on - strand, within HSERO_RS21570 at 4938.334 kb on - strand, within HSERO_RS21570 at 4938.341 kb on + strand, within HSERO_RS21570 at 4938.410 kb on + strand at 4938.732 kb on - strand, within HSERO_RS21575 at 4938.805 kb on + strand, within HSERO_RS21575 at 4939.008 kb on - strand at 4939.160 kb on + strand, within HSERO_RS21575 at 4939.480 kb on + strand at 4939.483 kb on + strand at 4939.488 kb on - strand at 4939.577 kb on + strand at 4939.590 kb on - strand at 4939.590 kb on - strand at 4939.600 kb on - strand at 4939.640 kb on + strand, within HSERO_RS21580 at 4939.670 kb on + strand, within HSERO_RS21580 at 4939.670 kb on + strand, within HSERO_RS21580 at 4939.678 kb on - strand, within HSERO_RS21580 at 4939.907 kb on + strand, within HSERO_RS21580 at 4939.915 kb on - strand, within HSERO_RS21580 at 4940.019 kb on + strand, within HSERO_RS21580 at 4940.076 kb on - strand, within HSERO_RS21580
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB remove 4,937,493 - HSERO_RS21565 0.88 -0.2 4,937,504 + HSERO_RS21565 0.88 -0.3 4,937,587 + -0.6 4,937,616 + +0.2 4,937,822 + -0.5 4,937,850 - -0.2 4,937,874 - -0.3 4,937,921 - +0.8 4,937,927 + -0.9 4,937,927 + -1.3 4,938,177 - HSERO_RS21570 0.42 +0.1 4,938,187 - HSERO_RS21570 0.44 -0.9 4,938,220 + HSERO_RS21570 0.51 -1.7 4,938,243 + HSERO_RS21570 0.56 -0.6 4,938,243 + HSERO_RS21570 0.56 +0.1 4,938,246 - HSERO_RS21570 0.56 +0.2 4,938,334 - HSERO_RS21570 0.74 -2.4 4,938,341 + HSERO_RS21570 0.76 -0.5 4,938,410 + -0.4 4,938,732 - HSERO_RS21575 0.28 -0.8 4,938,805 + HSERO_RS21575 0.36 -0.6 4,939,008 - -2.0 4,939,160 + HSERO_RS21575 0.76 -0.8 4,939,480 + +0.8 4,939,483 + -0.1 4,939,488 - -0.5 4,939,577 + +2.4 4,939,590 - +1.4 4,939,590 - -0.0 4,939,600 - +1.0 4,939,640 + HSERO_RS21580 0.12 +0.1 4,939,670 + HSERO_RS21580 0.15 +0.2 4,939,670 + HSERO_RS21580 0.15 -1.4 4,939,678 - HSERO_RS21580 0.16 +0.4 4,939,907 + HSERO_RS21580 0.37 -0.1 4,939,915 - HSERO_RS21580 0.38 -0.2 4,940,019 + HSERO_RS21580 0.48 -2.4 4,940,076 - HSERO_RS21580 0.54 -0.4
Or see this region's nucleotide sequence