Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17845

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17835 and HSERO_RS17840 are separated by 112 nucleotidesHSERO_RS17840 and HSERO_RS17845 are separated by 149 nucleotidesHSERO_RS17845 and HSERO_RS17850 overlap by 4 nucleotidesHSERO_RS17850 and HSERO_RS17855 are separated by 9 nucleotides HSERO_RS17835: HSERO_RS17835 - NADPH-dependent FMN reductase, at 4,099,694 to 4,100,269 _RS17835 HSERO_RS17840: HSERO_RS17840 - quercetin 2,3-dioxygenase, at 4,100,382 to 4,101,083 _RS17840 HSERO_RS17845: HSERO_RS17845 - LysR family transcriptional regulator, at 4,101,233 to 4,102,171 _RS17845 HSERO_RS17850: HSERO_RS17850 - glutamyl-Q tRNA(Asp) ligase, at 4,102,168 to 4,103,052 _RS17850 HSERO_RS17855: HSERO_RS17855 - DEAD/DEAH box helicase, at 4,103,062 to 4,104,525 _RS17855 Position (kb) 4101 4102 4103Strain fitness (log2 ratio) -2 -1 0 1 2at 4100.413 kb on + strandat 4100.462 kb on - strand, within HSERO_RS17840at 4100.547 kb on + strand, within HSERO_RS17840at 4100.664 kb on - strand, within HSERO_RS17840at 4100.705 kb on - strand, within HSERO_RS17840at 4100.769 kb on + strand, within HSERO_RS17840at 4100.777 kb on - strand, within HSERO_RS17840at 4100.782 kb on - strand, within HSERO_RS17840at 4100.853 kb on + strand, within HSERO_RS17840at 4100.928 kb on - strand, within HSERO_RS17840at 4100.978 kb on - strand, within HSERO_RS17840at 4100.990 kb on + strand, within HSERO_RS17840at 4101.334 kb on + strand, within HSERO_RS17845at 4101.344 kb on - strand, within HSERO_RS17845at 4101.344 kb on - strand, within HSERO_RS17845at 4101.567 kb on - strand, within HSERO_RS17845at 4101.633 kb on - strand, within HSERO_RS17845at 4101.636 kb on + strand, within HSERO_RS17845at 4101.690 kb on + strand, within HSERO_RS17845at 4101.867 kb on + strand, within HSERO_RS17845at 4101.904 kb on + strand, within HSERO_RS17845at 4101.992 kb on - strand, within HSERO_RS17845at 4102.063 kb on + strand, within HSERO_RS17845at 4102.071 kb on - strand, within HSERO_RS17845at 4102.317 kb on - strand, within HSERO_RS17850at 4102.324 kb on + strand, within HSERO_RS17850at 4102.742 kb on + strand, within HSERO_RS17850at 4102.783 kb on - strand, within HSERO_RS17850at 4103.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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4,100,413 + -2.5
4,100,462 - HSERO_RS17840 0.11 +1.0
4,100,547 + HSERO_RS17840 0.24 +0.3
4,100,664 - HSERO_RS17840 0.40 -0.8
4,100,705 - HSERO_RS17840 0.46 -0.4
4,100,769 + HSERO_RS17840 0.55 -0.6
4,100,777 - HSERO_RS17840 0.56 -1.2
4,100,782 - HSERO_RS17840 0.57 -0.4
4,100,853 + HSERO_RS17840 0.67 +0.5
4,100,928 - HSERO_RS17840 0.78 -0.8
4,100,978 - HSERO_RS17840 0.85 -0.3
4,100,990 + HSERO_RS17840 0.87 -0.6
4,101,334 + HSERO_RS17845 0.11 +1.2
4,101,344 - HSERO_RS17845 0.12 -0.6
4,101,344 - HSERO_RS17845 0.12 -0.1
4,101,567 - HSERO_RS17845 0.36 +0.7
4,101,633 - HSERO_RS17845 0.43 +0.8
4,101,636 + HSERO_RS17845 0.43 +0.3
4,101,690 + HSERO_RS17845 0.49 -0.0
4,101,867 + HSERO_RS17845 0.68 -0.3
4,101,904 + HSERO_RS17845 0.71 -1.0
4,101,992 - HSERO_RS17845 0.81 +1.8
4,102,063 + HSERO_RS17845 0.88 -0.3
4,102,071 - HSERO_RS17845 0.89 -0.8
4,102,317 - HSERO_RS17850 0.17 +1.0
4,102,324 + HSERO_RS17850 0.18 +0.5
4,102,742 + HSERO_RS17850 0.65 +0.9
4,102,783 - HSERO_RS17850 0.69 -0.3
4,103,127 + +0.2

Or see this region's nucleotide sequence