Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16030

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS16020 and HSERO_RS16025 are separated by 69 nucleotidesHSERO_RS16025 and HSERO_RS16030 are separated by 72 nucleotidesHSERO_RS16030 and HSERO_RS16035 are separated by 30 nucleotides HSERO_RS16020: HSERO_RS16020 - transcriptional regulator, at 3,659,370 to 3,660,206 _RS16020 HSERO_RS16025: HSERO_RS16025 - membrane protein, at 3,660,276 to 3,660,527 _RS16025 HSERO_RS16030: HSERO_RS16030 - cytochrome oxidase assembly protein, at 3,660,600 to 3,661,172 _RS16030 HSERO_RS16035: HSERO_RS16035 - cytochrome C oxidase, at 3,661,203 to 3,662,675 _RS16035 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -2 -1 0 1 2at 3659.751 kb on - strand, within HSERO_RS16020at 3660.621 kb on - strandat 3660.657 kb on + strandat 3660.996 kb on - strand, within HSERO_RS16030at 3660.996 kb on - strand, within HSERO_RS16030at 3660.998 kb on + strand, within HSERO_RS16030at 3661.191 kb on + strandat 3662.057 kb on + strand, within HSERO_RS16035

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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3,659,751 - HSERO_RS16020 0.46 +2.1
3,660,621 - -0.5
3,660,657 + -0.7
3,660,996 - HSERO_RS16030 0.69 -0.1
3,660,996 - HSERO_RS16030 0.69 -0.4
3,660,998 + HSERO_RS16030 0.69 -1.6
3,661,191 + -2.2
3,662,057 + HSERO_RS16035 0.58 +1.1

Or see this region's nucleotide sequence