Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09915

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09905 and HSERO_RS09910 are separated by 124 nucleotidesHSERO_RS09910 and HSERO_RS09915 are separated by 3 nucleotidesHSERO_RS09915 and HSERO_RS09920 are separated by 158 nucleotidesHSERO_RS09920 and HSERO_RS09925 are separated by 72 nucleotides HSERO_RS09905: HSERO_RS09905 - phenylalanyl-tRNA synthetase subunit beta, at 2,238,959 to 2,241,385 _RS09905 HSERO_RS09910: HSERO_RS09910 - integration host factor subunit alpha, at 2,241,510 to 2,241,863 _RS09910 HSERO_RS09915: HSERO_RS09915 - transcriptional regulator, at 2,241,867 to 2,242,274 _RS09915 HSERO_RS09920: HSERO_RS09920 - acetyltransferase, at 2,242,433 to 2,242,942 _RS09920 HSERO_RS09925: HSERO_RS09925 - hypothetical protein, at 2,243,015 to 2,243,641 _RS09925 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -1 0 1 2at 2241.817 kb on + strand, within HSERO_RS09910at 2241.934 kb on + strand, within HSERO_RS09915at 2242.268 kb on + strandat 2242.615 kb on - strand, within HSERO_RS09920at 2242.817 kb on + strand, within HSERO_RS09920at 2243.059 kb on + strandat 2243.107 kb on + strand, within HSERO_RS09925at 2243.193 kb on - strand, within HSERO_RS09925

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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2,241,817 + HSERO_RS09910 0.87 -0.6
2,241,934 + HSERO_RS09915 0.16 -0.8
2,242,268 + -0.1
2,242,615 - HSERO_RS09920 0.36 -0.1
2,242,817 + HSERO_RS09920 0.75 -0.2
2,243,059 + -1.4
2,243,107 + HSERO_RS09925 0.15 +2.7
2,243,193 - HSERO_RS09925 0.28 -0.4

Or see this region's nucleotide sequence