Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06960

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS06955 and HSERO_RS06960 are separated by 42 nucleotidesHSERO_RS06960 and HSERO_RS06965 are separated by 99 nucleotides HSERO_RS06955: HSERO_RS06955 - phosphoglucosamine mutase, at 1,583,690 to 1,585,024 _RS06955 HSERO_RS06960: HSERO_RS06960 - chemotaxis protein CheY, at 1,585,067 to 1,585,759 _RS06960 HSERO_RS06965: HSERO_RS06965 - alcohol dehydrogenase, at 1,585,859 to 1,587,127 _RS06965 Position (kb) 1585 1586Strain fitness (log2 ratio) -3 -2 -1 0 1at 1585.048 kb on - strandat 1585.338 kb on - strand, within HSERO_RS06960at 1585.629 kb on - strand, within HSERO_RS06960at 1585.629 kb on - strand, within HSERO_RS06960at 1585.656 kb on + strand, within HSERO_RS06960at 1585.715 kb on - strandat 1585.857 kb on + strandat 1585.964 kb on - strandat 1586.134 kb on - strand, within HSERO_RS06965at 1586.134 kb on - strand, within HSERO_RS06965at 1586.134 kb on - strand, within HSERO_RS06965at 1586.174 kb on - strandat 1586.355 kb on - strand, within HSERO_RS06965at 1586.373 kb on + strand, within HSERO_RS06965at 1586.373 kb on + strand, within HSERO_RS06965at 1586.373 kb on + strand, within HSERO_RS06965at 1586.443 kb on + strand, within HSERO_RS06965at 1586.451 kb on - strand, within HSERO_RS06965at 1586.550 kb on + strandat 1586.677 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
remove
1,585,048 - +0.0
1,585,338 - HSERO_RS06960 0.39 -1.2
1,585,629 - HSERO_RS06960 0.81 -1.3
1,585,629 - HSERO_RS06960 0.81 +0.4
1,585,656 + HSERO_RS06960 0.85 -0.3
1,585,715 - -1.4
1,585,857 + -2.9
1,585,964 - +0.9
1,586,134 - HSERO_RS06965 0.22 +0.4
1,586,134 - HSERO_RS06965 0.22 +0.7
1,586,134 - HSERO_RS06965 0.22 +0.0
1,586,174 - -0.7
1,586,355 - HSERO_RS06965 0.39 -0.9
1,586,373 + HSERO_RS06965 0.41 -0.9
1,586,373 + HSERO_RS06965 0.41 -2.2
1,586,373 + HSERO_RS06965 0.41 +0.1
1,586,443 + HSERO_RS06965 0.46 -3.0
1,586,451 - HSERO_RS06965 0.47 -1.5
1,586,550 + -1.0
1,586,677 + +1.6

Or see this region's nucleotide sequence