Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05095

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05090 and HSERO_RS05095 are separated by 143 nucleotidesHSERO_RS05095 and HSERO_RS05100 are separated by 51 nucleotides HSERO_RS05090: HSERO_RS05090 - sugar ABC transporter ATP-binding protein, at 1,124,554 to 1,126,059 _RS05090 HSERO_RS05095: HSERO_RS05095 - LacI family transcription regulator, at 1,126,203 to 1,127,210 _RS05095 HSERO_RS05100: HSERO_RS05100 - sugar ABC transporter permease, at 1,127,262 to 1,128,275 _RS05100 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1125.221 kb on + strand, within HSERO_RS05090at 1125.432 kb on - strand, within HSERO_RS05090at 1125.708 kb on + strand, within HSERO_RS05090at 1125.789 kb on - strand, within HSERO_RS05090at 1125.890 kb on - strand, within HSERO_RS05090at 1125.940 kb on - strandat 1125.983 kb on - strandat 1126.142 kb on - strandat 1126.251 kb on - strandat 1126.276 kb on + strandat 1126.292 kb on - strandat 1126.366 kb on - strand, within HSERO_RS05095at 1126.463 kb on + strand, within HSERO_RS05095at 1126.471 kb on - strand, within HSERO_RS05095at 1126.893 kb on + strand, within HSERO_RS05095at 1127.080 kb on + strand, within HSERO_RS05095at 1127.260 kb on + strandat 1127.398 kb on - strand, within HSERO_RS05100at 1127.821 kb on - strand, within HSERO_RS05100at 1127.872 kb on + strand, within HSERO_RS05100at 1127.887 kb on - strand, within HSERO_RS05100at 1127.887 kb on - strand, within HSERO_RS05100at 1127.958 kb on + strand, within HSERO_RS05100at 1127.977 kb on - strand, within HSERO_RS05100at 1128.151 kb on + strand, within HSERO_RS05100

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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1,125,221 + HSERO_RS05090 0.44 -0.7
1,125,432 - HSERO_RS05090 0.58 +0.5
1,125,708 + HSERO_RS05090 0.77 -0.6
1,125,789 - HSERO_RS05090 0.82 -0.3
1,125,890 - HSERO_RS05090 0.89 -0.1
1,125,940 - +5.1
1,125,983 - +0.4
1,126,142 - -0.8
1,126,251 - -0.1
1,126,276 + -1.8
1,126,292 - +0.6
1,126,366 - HSERO_RS05095 0.16 -0.2
1,126,463 + HSERO_RS05095 0.26 +0.5
1,126,471 - HSERO_RS05095 0.27 +1.2
1,126,893 + HSERO_RS05095 0.68 +0.1
1,127,080 + HSERO_RS05095 0.87 +0.6
1,127,260 + -0.0
1,127,398 - HSERO_RS05100 0.13 -0.3
1,127,821 - HSERO_RS05100 0.55 -0.3
1,127,872 + HSERO_RS05100 0.60 -1.5
1,127,887 - HSERO_RS05100 0.62 +0.4
1,127,887 - HSERO_RS05100 0.62 +0.1
1,127,958 + HSERO_RS05100 0.69 -0.1
1,127,977 - HSERO_RS05100 0.71 +0.2
1,128,151 + HSERO_RS05100 0.88 -1.2

Or see this region's nucleotide sequence