Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03240

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS03230 and HSERO_RS03235 are separated by 332 nucleotidesHSERO_RS03235 and HSERO_RS03240 are separated by 211 nucleotidesHSERO_RS03240 and HSERO_RS03245 are separated by 400 nucleotides HSERO_RS03230: HSERO_RS03230 - transcriptional regulator, at 711,025 to 711,738 _RS03230 HSERO_RS03235: HSERO_RS03235 - hypothetical protein, at 712,071 to 712,484 _RS03235 HSERO_RS03240: HSERO_RS03240 - membrane protein, at 712,696 to 713,649 _RS03240 HSERO_RS03245: HSERO_RS03245 - ABC transporter substrate-binding protein, at 714,050 to 715,036 _RS03245 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1at 711.856 kb on - strandat 711.866 kb on + strandat 711.866 kb on + strandat 711.951 kb on + strandat 712.231 kb on + strand, within HSERO_RS03235at 712.588 kb on + strandat 712.955 kb on + strand, within HSERO_RS03240at 713.109 kb on + strand, within HSERO_RS03240at 713.183 kb on - strand, within HSERO_RS03240at 713.606 kb on - strandat 713.832 kb on + strandat 713.935 kb on - strandat 713.951 kb on - strandat 714.231 kb on - strand, within HSERO_RS03245at 714.326 kb on - strand, within HSERO_RS03245at 714.445 kb on + strand, within HSERO_RS03245at 714.554 kb on - strand, within HSERO_RS03245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
remove
711,856 - +0.0
711,866 + -0.3
711,866 + -0.9
711,951 + +0.7
712,231 + HSERO_RS03235 0.39 -1.3
712,588 + +0.8
712,955 + HSERO_RS03240 0.27 -3.1
713,109 + HSERO_RS03240 0.43 +0.1
713,183 - HSERO_RS03240 0.51 -2.2
713,606 - +0.4
713,832 + +0.1
713,935 - -2.4
713,951 - -0.2
714,231 - HSERO_RS03245 0.18 -0.4
714,326 - HSERO_RS03245 0.28 -1.3
714,445 + HSERO_RS03245 0.40 -0.3
714,554 - HSERO_RS03245 0.51 -0.2

Or see this region's nucleotide sequence