Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01265

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01260 and HSERO_RS01265 are separated by 49 nucleotidesHSERO_RS01265 and HSERO_RS01270 are separated by 98 nucleotides HSERO_RS01260: HSERO_RS01260 - 3-hydroxyacyl-CoA dehydrogenase, at 264,005 to 266,392 _RS01260 HSERO_RS01265: HSERO_RS01265 - acetyl-CoA acetyltransferase, at 266,442 to 267,638 _RS01265 HSERO_RS01270: HSERO_RS01270 - enoyl-CoA hydratase, at 267,737 to 268,507 _RS01270 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 265.951 kb on - strand, within HSERO_RS01260at 266.332 kb on + strandat 266.687 kb on + strand, within HSERO_RS01265at 266.695 kb on - strand, within HSERO_RS01265at 267.151 kb on - strand, within HSERO_RS01265at 267.632 kb on + strandat 267.813 kb on - strandat 268.004 kb on + strand, within HSERO_RS01270at 268.129 kb on + strand, within HSERO_RS01270at 268.230 kb on - strand, within HSERO_RS01270at 268.388 kb on + strand, within HSERO_RS01270at 268.464 kb on - strandat 268.571 kb on - strandat 268.575 kb on + strandat 268.582 kb on - strandat 268.584 kb on + strandat 268.585 kb on + strandat 268.585 kb on + strandat 268.588 kb on + strandat 268.588 kb on + strandat 268.593 kb on - strandat 268.593 kb on - strandat 268.593 kb on - strandat 268.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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265,951 - HSERO_RS01260 0.81 -0.2
266,332 + +1.0
266,687 + HSERO_RS01265 0.20 -0.0
266,695 - HSERO_RS01265 0.21 +1.0
267,151 - HSERO_RS01265 0.59 +1.2
267,632 + +2.0
267,813 - -2.3
268,004 + HSERO_RS01270 0.35 -1.8
268,129 + HSERO_RS01270 0.51 +0.1
268,230 - HSERO_RS01270 0.64 -1.4
268,388 + HSERO_RS01270 0.84 -0.2
268,464 - +0.5
268,571 - +0.8
268,575 + +0.6
268,582 - -0.4
268,584 + +0.1
268,585 + -0.1
268,585 + -1.2
268,588 + +0.2
268,588 + +0.7
268,593 - +0.2
268,593 - -0.9
268,593 - +0.3
268,593 - -0.1

Or see this region's nucleotide sequence