Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24970 and BWI76_RS24975 are separated by 8 nucleotides BWI76_RS24975 and BWI76_RS24980 are separated by 143 nucleotides
BWI76_RS24970: BWI76_RS24970 - peptidase U32, at 5,199,669 to 5,200,664
_RS24970
BWI76_RS24975: BWI76_RS24975 - U32 family peptidase, at 5,200,673 to 5,201,551
_RS24975
BWI76_RS24980: BWI76_RS24980 - LLM class flavin-dependent oxidoreductase, at 5,201,695 to 5,202,702
_RS24980
Position (kb) 5200
5201
5202 Strain fitness (log2 ratio) -1
0
1 at 5199.685 kb on - strand at 5199.826 kb on - strand, within BWI76_RS24970 at 5199.867 kb on + strand, within BWI76_RS24970 at 5199.869 kb on - strand, within BWI76_RS24970 at 5200.138 kb on - strand, within BWI76_RS24970 at 5200.429 kb on + strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.450 kb on - strand, within BWI76_RS24970 at 5200.634 kb on - strand at 5200.649 kb on + strand at 5200.830 kb on - strand, within BWI76_RS24975 at 5200.859 kb on - strand, within BWI76_RS24975 at 5200.886 kb on + strand, within BWI76_RS24975 at 5200.896 kb on + strand, within BWI76_RS24975 at 5200.896 kb on + strand, within BWI76_RS24975 at 5200.899 kb on - strand, within BWI76_RS24975 at 5200.904 kb on - strand, within BWI76_RS24975 at 5200.931 kb on - strand, within BWI76_RS24975 at 5201.048 kb on - strand, within BWI76_RS24975 at 5201.194 kb on + strand, within BWI76_RS24975 at 5201.270 kb on - strand, within BWI76_RS24975 at 5201.351 kb on + strand, within BWI76_RS24975 at 5201.379 kb on - strand, within BWI76_RS24975 at 5201.685 kb on - strand at 5201.780 kb on + strand at 5201.788 kb on - strand at 5201.849 kb on - strand, within BWI76_RS24980 at 5201.912 kb on - strand, within BWI76_RS24980 at 5201.985 kb on + strand, within BWI76_RS24980 at 5202.143 kb on + strand, within BWI76_RS24980 at 5202.214 kb on - strand, within BWI76_RS24980 at 5202.219 kb on - strand, within BWI76_RS24980 at 5202.221 kb on - strand, within BWI76_RS24980 at 5202.295 kb on + strand, within BWI76_RS24980 at 5202.303 kb on + strand, within BWI76_RS24980 at 5202.303 kb on - strand, within BWI76_RS24980 at 5202.421 kb on + strand, within BWI76_RS24980 at 5202.465 kb on + strand, within BWI76_RS24980 at 5202.492 kb on + strand, within BWI76_RS24980 at 5202.492 kb on + strand, within BWI76_RS24980 at 5202.503 kb on + strand, within BWI76_RS24980 at 5202.511 kb on - strand, within BWI76_RS24980
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 5,199,685 - -0.9 5,199,826 - BWI76_RS24970 0.16 -0.1 5,199,867 + BWI76_RS24970 0.20 -0.6 5,199,869 - BWI76_RS24970 0.20 -0.8 5,200,138 - BWI76_RS24970 0.47 -0.7 5,200,429 + BWI76_RS24970 0.76 -0.9 5,200,437 - BWI76_RS24970 0.77 -0.5 5,200,437 - BWI76_RS24970 0.77 -0.1 5,200,450 - BWI76_RS24970 0.78 -0.3 5,200,634 - +0.1 5,200,649 + +0.4 5,200,830 - BWI76_RS24975 0.18 +0.2 5,200,859 - BWI76_RS24975 0.21 +0.6 5,200,886 + BWI76_RS24975 0.24 -0.3 5,200,896 + BWI76_RS24975 0.25 -0.1 5,200,896 + BWI76_RS24975 0.25 +1.1 5,200,899 - BWI76_RS24975 0.26 +1.3 5,200,904 - BWI76_RS24975 0.26 +0.8 5,200,931 - BWI76_RS24975 0.29 -0.1 5,201,048 - BWI76_RS24975 0.43 +0.1 5,201,194 + BWI76_RS24975 0.59 +0.6 5,201,270 - BWI76_RS24975 0.68 -0.2 5,201,351 + BWI76_RS24975 0.77 +0.2 5,201,379 - BWI76_RS24975 0.80 +0.5 5,201,685 - +0.2 5,201,780 + +0.5 5,201,788 - +0.1 5,201,849 - BWI76_RS24980 0.15 +0.1 5,201,912 - BWI76_RS24980 0.22 -0.5 5,201,985 + BWI76_RS24980 0.29 -0.4 5,202,143 + BWI76_RS24980 0.44 -0.4 5,202,214 - BWI76_RS24980 0.51 +0.6 5,202,219 - BWI76_RS24980 0.52 -0.2 5,202,221 - BWI76_RS24980 0.52 +0.2 5,202,295 + BWI76_RS24980 0.60 -0.1 5,202,303 + BWI76_RS24980 0.60 +0.1 5,202,303 - BWI76_RS24980 0.60 -0.0 5,202,421 + BWI76_RS24980 0.72 +0.0 5,202,465 + BWI76_RS24980 0.76 -0.3 5,202,492 + BWI76_RS24980 0.79 -0.1 5,202,492 + BWI76_RS24980 0.79 -0.1 5,202,503 + BWI76_RS24980 0.80 +0.0 5,202,511 - BWI76_RS24980 0.81 +1.0
Or see this region's nucleotide sequence