Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16895 and BWI76_RS16900 are separated by 74 nucleotides BWI76_RS16900 and BWI76_RS16905 overlap by 4 nucleotides BWI76_RS16905 and BWI76_RS16910 overlap by 8 nucleotides
BWI76_RS16895: BWI76_RS16895 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 3,503,327 to 3,504,523
_RS16895
BWI76_RS16900: BWI76_RS16900 - 4-hydroxy-2-oxovalerate aldolase, at 3,504,598 to 3,505,614
_RS16900
BWI76_RS16905: BWI76_RS16905 - acetaldehyde dehydrogenase (acetylating), at 3,505,611 to 3,506,561
_RS16905
BWI76_RS16910: BWI76_RS16910 - 2-keto-4-pentenoate hydratase, at 3,506,554 to 3,507,360
_RS16910
Position (kb)
3504
3505
3506 Strain fitness (log2 ratio)
-2
-1
0
1 at 3504.087 kb on + strand, within BWI76_RS16895 at 3504.221 kb on + strand, within BWI76_RS16895 at 3504.460 kb on + strand at 3504.836 kb on + strand, within BWI76_RS16900 at 3505.512 kb on - strand, within BWI76_RS16900 at 3506.110 kb on - strand, within BWI76_RS16905 at 3506.206 kb on + strand, within BWI76_RS16905 at 3506.232 kb on + strand, within BWI76_RS16905 at 3506.287 kb on - strand, within BWI76_RS16905 at 3506.575 kb on - strand at 3506.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 3,504,087 + BWI76_RS16895 0.63 +0.2 3,504,221 + BWI76_RS16895 0.75 -1.7 3,504,460 + -0.5 3,504,836 + BWI76_RS16900 0.23 +0.7 3,505,512 - BWI76_RS16900 0.90 -0.1 3,506,110 - BWI76_RS16905 0.52 +0.4 3,506,206 + BWI76_RS16905 0.63 -0.2 3,506,232 + BWI76_RS16905 0.65 -1.8 3,506,287 - BWI76_RS16905 0.71 -0.5 3,506,575 - -0.1 3,506,594 - -0.2
Or see this region's nucleotide sequence