Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29830 and AO356_29835 overlap by 4 nucleotides AO356_29835 and AO356_29840 are separated by 12 nucleotides
AO356_29830: AO356_29830 - histidine kinase, at 6,936,978 to 6,940,007
_29830
AO356_29835: AO356_29835 - LuxR family transcriptional regulator, at 6,940,004 to 6,940,633
_29835
AO356_29840: AO356_29840 - chemotaxis protein CheY, at 6,940,646 to 6,941,722
_29840
Position (kb)
6940
6941 Strain fitness (log2 ratio)
-2
-1
0
1 at 6939.142 kb on + strand, within AO356_29830 at 6939.142 kb on + strand, within AO356_29830 at 6939.198 kb on + strand, within AO356_29830 at 6939.198 kb on + strand, within AO356_29830 at 6939.199 kb on - strand, within AO356_29830 at 6939.199 kb on - strand, within AO356_29830 at 6939.199 kb on - strand, within AO356_29830 at 6939.199 kb on - strand, within AO356_29830 at 6939.307 kb on + strand, within AO356_29830 at 6939.308 kb on - strand, within AO356_29830 at 6939.308 kb on - strand, within AO356_29830 at 6939.316 kb on + strand, within AO356_29830 at 6939.317 kb on - strand, within AO356_29830 at 6939.457 kb on + strand, within AO356_29830 at 6939.937 kb on + strand at 6939.973 kb on + strand at 6939.974 kb on - strand at 6939.974 kb on - strand at 6940.081 kb on + strand, within AO356_29835 at 6940.081 kb on + strand, within AO356_29835 at 6940.305 kb on - strand, within AO356_29835 at 6940.373 kb on + strand, within AO356_29835 at 6940.592 kb on - strand at 6940.749 kb on + strand at 6940.750 kb on - strand at 6940.750 kb on - strand at 6940.898 kb on + strand, within AO356_29840 at 6940.898 kb on + strand, within AO356_29840 at 6940.898 kb on + strand, within AO356_29840 at 6940.899 kb on - strand, within AO356_29840 at 6940.899 kb on - strand, within AO356_29840 at 6940.899 kb on - strand, within AO356_29840 at 6940.899 kb on - strand, within AO356_29840 at 6941.040 kb on - strand, within AO356_29840 at 6941.142 kb on - strand, within AO356_29840 at 6941.142 kb on - strand, within AO356_29840 at 6941.494 kb on + strand, within AO356_29840 at 6941.495 kb on - strand, within AO356_29840 at 6941.527 kb on + strand, within AO356_29840 at 6941.527 kb on + strand, within AO356_29840 at 6941.528 kb on - strand, within AO356_29840 at 6941.528 kb on - strand, within AO356_29840 at 6941.604 kb on + strand, within AO356_29840
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 6,939,142 + AO356_29830 0.71 -2.3 6,939,142 + AO356_29830 0.71 -1.1 6,939,198 + AO356_29830 0.73 -0.8 6,939,198 + AO356_29830 0.73 -0.5 6,939,199 - AO356_29830 0.73 -0.5 6,939,199 - AO356_29830 0.73 -0.5 6,939,199 - AO356_29830 0.73 -0.0 6,939,199 - AO356_29830 0.73 +0.1 6,939,307 + AO356_29830 0.77 -0.6 6,939,308 - AO356_29830 0.77 +0.1 6,939,308 - AO356_29830 0.77 -0.5 6,939,316 + AO356_29830 0.77 -2.5 6,939,317 - AO356_29830 0.77 +0.8 6,939,457 + AO356_29830 0.82 +0.1 6,939,937 + -0.9 6,939,973 + -0.7 6,939,974 - +0.7 6,939,974 - -0.8 6,940,081 + AO356_29835 0.12 +0.7 6,940,081 + AO356_29835 0.12 +0.5 6,940,305 - AO356_29835 0.48 -0.5 6,940,373 + AO356_29835 0.59 +0.5 6,940,592 - +0.6 6,940,749 + +0.7 6,940,750 - +0.7 6,940,750 - +0.1 6,940,898 + AO356_29840 0.23 -0.7 6,940,898 + AO356_29840 0.23 +0.7 6,940,898 + AO356_29840 0.23 -0.7 6,940,899 - AO356_29840 0.23 +0.9 6,940,899 - AO356_29840 0.23 +0.6 6,940,899 - AO356_29840 0.23 +0.4 6,940,899 - AO356_29840 0.23 +0.8 6,941,040 - AO356_29840 0.37 -0.4 6,941,142 - AO356_29840 0.46 -0.5 6,941,142 - AO356_29840 0.46 -0.0 6,941,494 + AO356_29840 0.79 -0.0 6,941,495 - AO356_29840 0.79 +0.3 6,941,527 + AO356_29840 0.82 -1.0 6,941,527 + AO356_29840 0.82 +0.9 6,941,528 - AO356_29840 0.82 -0.2 6,941,528 - AO356_29840 0.82 +0.5 6,941,604 + AO356_29840 0.89 +0.5
Or see this region's nucleotide sequence