Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29835

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29830 and AO356_29835 overlap by 4 nucleotidesAO356_29835 and AO356_29840 are separated by 12 nucleotides AO356_29830: AO356_29830 - histidine kinase, at 6,936,978 to 6,940,007 _29830 AO356_29835: AO356_29835 - LuxR family transcriptional regulator, at 6,940,004 to 6,940,633 _29835 AO356_29840: AO356_29840 - chemotaxis protein CheY, at 6,940,646 to 6,941,722 _29840 Position (kb) 6940 6941Strain fitness (log2 ratio) -2 -1 0 1at 6939.142 kb on + strand, within AO356_29830at 6939.142 kb on + strand, within AO356_29830at 6939.198 kb on + strand, within AO356_29830at 6939.198 kb on + strand, within AO356_29830at 6939.199 kb on - strand, within AO356_29830at 6939.199 kb on - strand, within AO356_29830at 6939.199 kb on - strand, within AO356_29830at 6939.199 kb on - strand, within AO356_29830at 6939.307 kb on + strand, within AO356_29830at 6939.308 kb on - strand, within AO356_29830at 6939.308 kb on - strand, within AO356_29830at 6939.316 kb on + strand, within AO356_29830at 6939.317 kb on - strand, within AO356_29830at 6939.457 kb on + strand, within AO356_29830at 6939.937 kb on + strandat 6939.973 kb on + strandat 6939.974 kb on - strandat 6939.974 kb on - strandat 6940.081 kb on + strand, within AO356_29835at 6940.081 kb on + strand, within AO356_29835at 6940.305 kb on - strand, within AO356_29835at 6940.373 kb on + strand, within AO356_29835at 6940.592 kb on - strandat 6940.749 kb on + strandat 6940.750 kb on - strandat 6940.750 kb on - strandat 6940.898 kb on + strand, within AO356_29840at 6940.898 kb on + strand, within AO356_29840at 6940.898 kb on + strand, within AO356_29840at 6940.899 kb on - strand, within AO356_29840at 6940.899 kb on - strand, within AO356_29840at 6940.899 kb on - strand, within AO356_29840at 6940.899 kb on - strand, within AO356_29840at 6941.040 kb on - strand, within AO356_29840at 6941.142 kb on - strand, within AO356_29840at 6941.142 kb on - strand, within AO356_29840at 6941.494 kb on + strand, within AO356_29840at 6941.495 kb on - strand, within AO356_29840at 6941.527 kb on + strand, within AO356_29840at 6941.527 kb on + strand, within AO356_29840at 6941.528 kb on - strand, within AO356_29840at 6941.528 kb on - strand, within AO356_29840at 6941.604 kb on + strand, within AO356_29840

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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6,939,142 + AO356_29830 0.71 -2.3
6,939,142 + AO356_29830 0.71 -1.1
6,939,198 + AO356_29830 0.73 -0.8
6,939,198 + AO356_29830 0.73 -0.5
6,939,199 - AO356_29830 0.73 -0.5
6,939,199 - AO356_29830 0.73 -0.5
6,939,199 - AO356_29830 0.73 -0.0
6,939,199 - AO356_29830 0.73 +0.1
6,939,307 + AO356_29830 0.77 -0.6
6,939,308 - AO356_29830 0.77 +0.1
6,939,308 - AO356_29830 0.77 -0.5
6,939,316 + AO356_29830 0.77 -2.5
6,939,317 - AO356_29830 0.77 +0.8
6,939,457 + AO356_29830 0.82 +0.1
6,939,937 + -0.9
6,939,973 + -0.7
6,939,974 - +0.7
6,939,974 - -0.8
6,940,081 + AO356_29835 0.12 +0.7
6,940,081 + AO356_29835 0.12 +0.5
6,940,305 - AO356_29835 0.48 -0.5
6,940,373 + AO356_29835 0.59 +0.5
6,940,592 - +0.6
6,940,749 + +0.7
6,940,750 - +0.7
6,940,750 - +0.1
6,940,898 + AO356_29840 0.23 -0.7
6,940,898 + AO356_29840 0.23 +0.7
6,940,898 + AO356_29840 0.23 -0.7
6,940,899 - AO356_29840 0.23 +0.9
6,940,899 - AO356_29840 0.23 +0.6
6,940,899 - AO356_29840 0.23 +0.4
6,940,899 - AO356_29840 0.23 +0.8
6,941,040 - AO356_29840 0.37 -0.4
6,941,142 - AO356_29840 0.46 -0.5
6,941,142 - AO356_29840 0.46 -0.0
6,941,494 + AO356_29840 0.79 -0.0
6,941,495 - AO356_29840 0.79 +0.3
6,941,527 + AO356_29840 0.82 -1.0
6,941,527 + AO356_29840 0.82 +0.9
6,941,528 - AO356_29840 0.82 -0.2
6,941,528 - AO356_29840 0.82 +0.5
6,941,604 + AO356_29840 0.89 +0.5

Or see this region's nucleotide sequence