Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27510 and AO356_27515 are separated by 215 nucleotides AO356_27515 and AO356_27520 are separated by 38 nucleotides
AO356_27510: AO356_27510 - AraC family transcriptional regulator, at 6,269,799 to 6,270,767
_27510
AO356_27515: AO356_27515 - 4-aminobutyrate aminotransferase, at 6,270,983 to 6,272,356
_27515
AO356_27520: AO356_27520 - betaine-aldehyde dehydrogenase, at 6,272,395 to 6,273,849
_27520
Position (kb)
6270
6271
6272
6273 Strain fitness (log2 ratio)
-1
0
1 at 6269.996 kb on - strand, within AO356_27510 at 6269.996 kb on - strand, within AO356_27510 at 6270.139 kb on + strand, within AO356_27510 at 6270.140 kb on - strand, within AO356_27510 at 6270.140 kb on - strand, within AO356_27510 at 6270.161 kb on + strand, within AO356_27510 at 6270.425 kb on + strand, within AO356_27510 at 6270.663 kb on - strand, within AO356_27510 at 6270.691 kb on + strand at 6270.691 kb on + strand at 6270.919 kb on + strand at 6271.034 kb on - strand at 6271.178 kb on + strand, within AO356_27515 at 6271.178 kb on + strand, within AO356_27515 at 6271.178 kb on + strand, within AO356_27515 at 6271.178 kb on + strand, within AO356_27515 at 6271.179 kb on - strand, within AO356_27515 at 6271.363 kb on + strand, within AO356_27515 at 6271.363 kb on + strand, within AO356_27515 at 6271.363 kb on + strand, within AO356_27515 at 6271.364 kb on - strand, within AO356_27515 at 6271.364 kb on - strand, within AO356_27515 at 6271.565 kb on + strand, within AO356_27515 at 6271.565 kb on + strand, within AO356_27515 at 6272.080 kb on + strand, within AO356_27515 at 6272.252 kb on + strand at 6272.491 kb on + strand at 6272.711 kb on + strand, within AO356_27520 at 6272.791 kb on + strand, within AO356_27520 at 6272.815 kb on + strand, within AO356_27520 at 6272.816 kb on - strand, within AO356_27520 at 6273.347 kb on + strand, within AO356_27520 at 6273.348 kb on - strand, within AO356_27520
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 6,269,996 - AO356_27510 0.20 +1.0 6,269,996 - AO356_27510 0.20 +0.3 6,270,139 + AO356_27510 0.35 -0.2 6,270,140 - AO356_27510 0.35 -0.6 6,270,140 - AO356_27510 0.35 -0.7 6,270,161 + AO356_27510 0.37 -0.6 6,270,425 + AO356_27510 0.65 -0.2 6,270,663 - AO356_27510 0.89 +0.1 6,270,691 + -0.1 6,270,691 + +0.1 6,270,919 + +0.9 6,271,034 - -0.1 6,271,178 + AO356_27515 0.14 -0.2 6,271,178 + AO356_27515 0.14 -0.7 6,271,178 + AO356_27515 0.14 +0.6 6,271,178 + AO356_27515 0.14 -0.6 6,271,179 - AO356_27515 0.14 +0.5 6,271,363 + AO356_27515 0.28 +0.1 6,271,363 + AO356_27515 0.28 +1.3 6,271,363 + AO356_27515 0.28 -0.0 6,271,364 - AO356_27515 0.28 -0.7 6,271,364 - AO356_27515 0.28 +1.0 6,271,565 + AO356_27515 0.42 +0.1 6,271,565 + AO356_27515 0.42 +0.7 6,272,080 + AO356_27515 0.80 -0.0 6,272,252 + -0.2 6,272,491 + -0.0 6,272,711 + AO356_27520 0.22 +0.3 6,272,791 + AO356_27520 0.27 +0.4 6,272,815 + AO356_27520 0.29 +0.0 6,272,816 - AO356_27520 0.29 -1.0 6,273,347 + AO356_27520 0.65 +0.1 6,273,348 - AO356_27520 0.65 -1.1
Or see this region's nucleotide sequence