Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27515

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_27510 and AO356_27515 are separated by 215 nucleotidesAO356_27515 and AO356_27520 are separated by 38 nucleotides AO356_27510: AO356_27510 - AraC family transcriptional regulator, at 6,269,799 to 6,270,767 _27510 AO356_27515: AO356_27515 - 4-aminobutyrate aminotransferase, at 6,270,983 to 6,272,356 _27515 AO356_27520: AO356_27520 - betaine-aldehyde dehydrogenase, at 6,272,395 to 6,273,849 _27520 Position (kb) 6270 6271 6272 6273Strain fitness (log2 ratio) -1 0 1at 6269.996 kb on - strand, within AO356_27510at 6269.996 kb on - strand, within AO356_27510at 6270.139 kb on + strand, within AO356_27510at 6270.140 kb on - strand, within AO356_27510at 6270.140 kb on - strand, within AO356_27510at 6270.161 kb on + strand, within AO356_27510at 6270.425 kb on + strand, within AO356_27510at 6270.663 kb on - strand, within AO356_27510at 6270.691 kb on + strandat 6270.691 kb on + strandat 6270.919 kb on + strandat 6271.034 kb on - strandat 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.178 kb on + strand, within AO356_27515at 6271.179 kb on - strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.363 kb on + strand, within AO356_27515at 6271.364 kb on - strand, within AO356_27515at 6271.364 kb on - strand, within AO356_27515at 6271.565 kb on + strand, within AO356_27515at 6271.565 kb on + strand, within AO356_27515at 6272.080 kb on + strand, within AO356_27515at 6272.252 kb on + strandat 6272.491 kb on + strandat 6272.711 kb on + strand, within AO356_27520at 6272.791 kb on + strand, within AO356_27520at 6272.815 kb on + strand, within AO356_27520at 6272.816 kb on - strand, within AO356_27520at 6273.347 kb on + strand, within AO356_27520at 6273.348 kb on - strand, within AO356_27520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
remove
6,269,996 - AO356_27510 0.20 +1.0
6,269,996 - AO356_27510 0.20 +0.3
6,270,139 + AO356_27510 0.35 -0.2
6,270,140 - AO356_27510 0.35 -0.6
6,270,140 - AO356_27510 0.35 -0.7
6,270,161 + AO356_27510 0.37 -0.6
6,270,425 + AO356_27510 0.65 -0.2
6,270,663 - AO356_27510 0.89 +0.1
6,270,691 + -0.1
6,270,691 + +0.1
6,270,919 + +0.9
6,271,034 - -0.1
6,271,178 + AO356_27515 0.14 -0.2
6,271,178 + AO356_27515 0.14 -0.7
6,271,178 + AO356_27515 0.14 +0.6
6,271,178 + AO356_27515 0.14 -0.6
6,271,179 - AO356_27515 0.14 +0.5
6,271,363 + AO356_27515 0.28 +0.1
6,271,363 + AO356_27515 0.28 +1.3
6,271,363 + AO356_27515 0.28 -0.0
6,271,364 - AO356_27515 0.28 -0.7
6,271,364 - AO356_27515 0.28 +1.0
6,271,565 + AO356_27515 0.42 +0.1
6,271,565 + AO356_27515 0.42 +0.7
6,272,080 + AO356_27515 0.80 -0.0
6,272,252 + -0.2
6,272,491 + -0.0
6,272,711 + AO356_27520 0.22 +0.3
6,272,791 + AO356_27520 0.27 +0.4
6,272,815 + AO356_27520 0.29 +0.0
6,272,816 - AO356_27520 0.29 -1.0
6,273,347 + AO356_27520 0.65 +0.1
6,273,348 - AO356_27520 0.65 -1.1

Or see this region's nucleotide sequence