Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26825

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26815 and AO356_26820 are separated by 38 nucleotidesAO356_26820 and AO356_26825 are separated by 129 nucleotidesAO356_26825 and AO356_26830 overlap by 1 nucleotides AO356_26815: AO356_26815 - short-chain dehydrogenase, at 6,106,310 to 6,107,368 _26815 AO356_26820: AO356_26820 - hypothetical protein, at 6,107,407 to 6,107,667 _26820 AO356_26825: AO356_26825 - histidine kinase, at 6,107,797 to 6,109,170 _26825 AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874 _26830 Position (kb) 6107 6108 6109 6110Strain fitness (log2 ratio) -1 0 1at 6106.857 kb on + strand, within AO356_26815at 6107.201 kb on + strand, within AO356_26815at 6107.477 kb on + strand, within AO356_26820at 6107.477 kb on + strand, within AO356_26820at 6107.564 kb on + strand, within AO356_26820at 6107.780 kb on + strandat 6108.055 kb on + strand, within AO356_26825at 6108.056 kb on - strand, within AO356_26825at 6108.056 kb on - strand, within AO356_26825at 6108.692 kb on - strand, within AO356_26825at 6108.692 kb on - strand, within AO356_26825at 6108.747 kb on + strand, within AO356_26825at 6108.835 kb on - strand, within AO356_26825at 6108.890 kb on + strand, within AO356_26825at 6108.894 kb on + strand, within AO356_26825at 6108.895 kb on - strand, within AO356_26825at 6108.998 kb on + strand, within AO356_26825at 6108.999 kb on - strand, within AO356_26825at 6109.179 kb on - strandat 6109.193 kb on + strandat 6109.193 kb on + strandat 6109.194 kb on - strandat 6109.215 kb on + strandat 6109.215 kb on + strandat 6109.215 kb on + strandat 6109.216 kb on - strandat 6109.216 kb on - strandat 6109.220 kb on - strandat 6109.220 kb on - strandat 6109.585 kb on + strand, within AO356_26830at 6109.585 kb on + strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.697 kb on - strand, within AO356_26830at 6109.741 kb on + strand, within AO356_26830at 6109.742 kb on - strand, within AO356_26830at 6109.759 kb on + strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.802 kb on - strand, within AO356_26830at 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.831 kb on + strandat 6109.832 kb on - strandat 6109.915 kb on + strandat 6110.056 kb on + strandat 6110.086 kb on + strandat 6110.086 kb on + strandat 6110.087 kb on - strandat 6110.134 kb on + strandat 6110.135 kb on - strandat 6110.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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6,106,857 + AO356_26815 0.52 +0.6
6,107,201 + AO356_26815 0.84 -1.2
6,107,477 + AO356_26820 0.27 -0.0
6,107,477 + AO356_26820 0.27 -1.7
6,107,564 + AO356_26820 0.60 -0.2
6,107,780 + -0.5
6,108,055 + AO356_26825 0.19 +0.9
6,108,056 - AO356_26825 0.19 -0.4
6,108,056 - AO356_26825 0.19 -0.0
6,108,692 - AO356_26825 0.65 +0.4
6,108,692 - AO356_26825 0.65 -1.2
6,108,747 + AO356_26825 0.69 -1.3
6,108,835 - AO356_26825 0.76 -0.1
6,108,890 + AO356_26825 0.80 -0.2
6,108,894 + AO356_26825 0.80 +1.3
6,108,895 - AO356_26825 0.80 -0.2
6,108,998 + AO356_26825 0.87 -0.0
6,108,999 - AO356_26825 0.87 +0.5
6,109,179 - -0.5
6,109,193 + +1.6
6,109,193 + -1.4
6,109,194 - +0.6
6,109,215 + +0.3
6,109,215 + +0.0
6,109,215 + -0.1
6,109,216 - -0.4
6,109,216 - +0.1
6,109,220 - +0.4
6,109,220 - +0.8
6,109,585 + AO356_26830 0.59 -0.1
6,109,585 + AO356_26830 0.59 +0.8
6,109,697 - AO356_26830 0.75 +0.4
6,109,697 - AO356_26830 0.75 -0.4
6,109,741 + AO356_26830 0.81 +0.3
6,109,742 - AO356_26830 0.81 +1.3
6,109,759 + AO356_26830 0.84 +1.6
6,109,802 - AO356_26830 0.90 +1.7
6,109,802 - AO356_26830 0.90 -0.7
6,109,802 - AO356_26830 0.90 -0.3
6,109,831 + -0.1
6,109,831 + -0.6
6,109,831 + -0.4
6,109,832 - -0.0
6,109,915 + -0.2
6,110,056 + +1.3
6,110,086 + +0.0
6,110,086 + -0.4
6,110,087 - -0.7
6,110,134 + -0.3
6,110,135 - +0.1
6,110,153 + +1.0

Or see this region's nucleotide sequence