Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26810

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26800 and AO356_26805 are separated by 84 nucleotidesAO356_26805 and AO356_26810 are separated by 72 nucleotidesAO356_26810 and AO356_26815 are separated by 69 nucleotides AO356_26800: AO356_26800 - aldehyde dehydrogenase, at 6,102,773 to 6,104,260 _26800 AO356_26805: AO356_26805 - hypothetical protein, at 6,104,345 to 6,104,845 _26805 AO356_26810: AO356_26810 - ADP/ATP translocating protein, at 6,104,918 to 6,106,240 _26810 AO356_26815: AO356_26815 - short-chain dehydrogenase, at 6,106,310 to 6,107,368 _26815 Position (kb) 6104 6105 6106 6107Strain fitness (log2 ratio) -1 0 1 2at 6103.977 kb on - strand, within AO356_26800at 6104.021 kb on + strand, within AO356_26800at 6104.255 kb on - strandat 6104.258 kb on + strandat 6104.258 kb on + strandat 6104.479 kb on + strand, within AO356_26805at 6104.479 kb on + strand, within AO356_26805at 6104.494 kb on + strand, within AO356_26805at 6104.494 kb on + strand, within AO356_26805at 6104.495 kb on - strand, within AO356_26805at 6104.694 kb on + strand, within AO356_26805at 6104.826 kb on - strandat 6104.886 kb on + strandat 6104.886 kb on + strandat 6104.892 kb on - strandat 6104.892 kb on - strandat 6105.145 kb on - strand, within AO356_26810at 6105.148 kb on + strand, within AO356_26810at 6105.398 kb on - strand, within AO356_26810at 6105.469 kb on - strand, within AO356_26810at 6105.521 kb on + strand, within AO356_26810at 6105.525 kb on + strand, within AO356_26810at 6105.526 kb on - strand, within AO356_26810at 6105.526 kb on - strand, within AO356_26810at 6105.526 kb on - strand, within AO356_26810at 6105.818 kb on + strand, within AO356_26810at 6105.819 kb on - strand, within AO356_26810at 6105.819 kb on - strand, within AO356_26810at 6105.819 kb on - strand, within AO356_26810at 6105.865 kb on - strand, within AO356_26810at 6105.882 kb on + strand, within AO356_26810at 6105.904 kb on + strand, within AO356_26810at 6105.904 kb on + strand, within AO356_26810at 6105.904 kb on + strand, within AO356_26810at 6105.966 kb on + strand, within AO356_26810at 6105.966 kb on + strand, within AO356_26810at 6105.995 kb on + strand, within AO356_26810at 6106.224 kb on + strandat 6106.224 kb on + strandat 6106.224 kb on + strandat 6106.225 kb on - strandat 6106.235 kb on - strandat 6106.235 kb on - strandat 6106.263 kb on + strandat 6106.263 kb on + strandat 6106.264 kb on - strandat 6106.318 kb on - strandat 6106.446 kb on + strand, within AO356_26815at 6106.446 kb on + strand, within AO356_26815at 6106.447 kb on - strand, within AO356_26815at 6106.483 kb on - strand, within AO356_26815at 6106.857 kb on + strand, within AO356_26815at 6107.201 kb on + strand, within AO356_26815

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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6,103,977 - AO356_26800 0.81 +1.6
6,104,021 + AO356_26800 0.84 +0.4
6,104,255 - +1.1
6,104,258 + +0.1
6,104,258 + -0.0
6,104,479 + AO356_26805 0.27 -1.2
6,104,479 + AO356_26805 0.27 +0.1
6,104,494 + AO356_26805 0.30 +0.8
6,104,494 + AO356_26805 0.30 +0.4
6,104,495 - AO356_26805 0.30 +2.0
6,104,694 + AO356_26805 0.70 +0.4
6,104,826 - +0.4
6,104,886 + +1.4
6,104,886 + +0.2
6,104,892 - -0.6
6,104,892 - -0.6
6,105,145 - AO356_26810 0.17 +0.3
6,105,148 + AO356_26810 0.17 +1.5
6,105,398 - AO356_26810 0.36 +0.3
6,105,469 - AO356_26810 0.42 +1.3
6,105,521 + AO356_26810 0.46 +0.5
6,105,525 + AO356_26810 0.46 -0.0
6,105,526 - AO356_26810 0.46 +0.7
6,105,526 - AO356_26810 0.46 -0.7
6,105,526 - AO356_26810 0.46 +0.1
6,105,818 + AO356_26810 0.68 +0.3
6,105,819 - AO356_26810 0.68 +1.6
6,105,819 - AO356_26810 0.68 -0.0
6,105,819 - AO356_26810 0.68 +1.0
6,105,865 - AO356_26810 0.72 -0.7
6,105,882 + AO356_26810 0.73 +1.0
6,105,904 + AO356_26810 0.75 +0.0
6,105,904 + AO356_26810 0.75 -0.0
6,105,904 + AO356_26810 0.75 +0.1
6,105,966 + AO356_26810 0.79 +0.3
6,105,966 + AO356_26810 0.79 +0.9
6,105,995 + AO356_26810 0.81 +0.8
6,106,224 + +0.1
6,106,224 + +0.3
6,106,224 + +0.1
6,106,225 - +2.1
6,106,235 - -0.0
6,106,235 - +0.1
6,106,263 + -0.2
6,106,263 + +0.4
6,106,264 - +0.8
6,106,318 - +0.2
6,106,446 + AO356_26815 0.13 +1.5
6,106,446 + AO356_26815 0.13 -0.1
6,106,447 - AO356_26815 0.13 -0.0
6,106,483 - AO356_26815 0.16 -1.3
6,106,857 + AO356_26815 0.52 +0.6
6,107,201 + AO356_26815 0.84 -1.2

Or see this region's nucleotide sequence