Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26715

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_26705 and AO356_26710 are separated by 46 nucleotidesAO356_26710 and AO356_26715 are separated by 92 nucleotidesAO356_26715 and AO356_26720 are separated by 287 nucleotides AO356_26705: AO356_26705 - AsnC family transcriptional regulator, at 6,080,308 to 6,080,796 _26705 AO356_26710: AO356_26710 - 2-haloalkanoic acid dehalogenase, at 6,080,843 to 6,081,499 _26710 AO356_26715: AO356_26715 - 4-aminobutyrate aminotransferase, at 6,081,592 to 6,082,884 _26715 AO356_26720: AO356_26720 - hydroxyacid dehydrogenase, at 6,083,172 to 6,084,098 _26720 Position (kb) 6081 6082 6083Strain fitness (log2 ratio) -2 -1 0 1at 6080.631 kb on - strand, within AO356_26705at 6080.640 kb on + strand, within AO356_26705at 6080.641 kb on - strand, within AO356_26705at 6080.642 kb on + strand, within AO356_26705at 6080.757 kb on + strandat 6080.777 kb on - strandat 6080.785 kb on + strandat 6080.785 kb on + strandat 6080.836 kb on - strandat 6080.913 kb on + strand, within AO356_26710at 6080.913 kb on + strand, within AO356_26710at 6081.141 kb on + strand, within AO356_26710at 6081.141 kb on + strand, within AO356_26710at 6081.171 kb on + strand, within AO356_26710at 6081.171 kb on + strand, within AO356_26710at 6081.334 kb on - strand, within AO356_26710at 6081.334 kb on - strand, within AO356_26710at 6081.541 kb on + strandat 6082.409 kb on + strand, within AO356_26715at 6082.449 kb on + strand, within AO356_26715at 6082.449 kb on + strand, within AO356_26715at 6082.449 kb on + strand, within AO356_26715at 6082.450 kb on - strand, within AO356_26715at 6082.498 kb on - strand, within AO356_26715at 6082.582 kb on + strand, within AO356_26715at 6082.583 kb on - strand, within AO356_26715at 6082.583 kb on - strand, within AO356_26715at 6082.617 kb on - strand, within AO356_26715at 6082.876 kb on - strandat 6083.072 kb on + strandat 6083.072 kb on + strandat 6083.073 kb on - strandat 6083.073 kb on - strandat 6083.073 kb on - strandat 6083.110 kb on + strandat 6083.110 kb on + strandat 6083.111 kb on - strandat 6083.184 kb on + strandat 6083.591 kb on - strand, within AO356_26720at 6083.855 kb on - strand, within AO356_26720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
remove
6,080,631 - AO356_26705 0.66 -0.7
6,080,640 + AO356_26705 0.68 +0.9
6,080,641 - AO356_26705 0.68 -1.7
6,080,642 + AO356_26705 0.68 +0.8
6,080,757 + -0.2
6,080,777 - -0.5
6,080,785 + +0.7
6,080,785 + +0.8
6,080,836 - -0.3
6,080,913 + AO356_26710 0.11 +0.3
6,080,913 + AO356_26710 0.11 -0.0
6,081,141 + AO356_26710 0.45 -0.2
6,081,141 + AO356_26710 0.45 -2.0
6,081,171 + AO356_26710 0.50 -0.7
6,081,171 + AO356_26710 0.50 -1.7
6,081,334 - AO356_26710 0.75 +0.1
6,081,334 - AO356_26710 0.75 -1.0
6,081,541 + -2.5
6,082,409 + AO356_26715 0.63 -0.3
6,082,449 + AO356_26715 0.66 -0.4
6,082,449 + AO356_26715 0.66 +0.3
6,082,449 + AO356_26715 0.66 +0.3
6,082,450 - AO356_26715 0.66 +0.6
6,082,498 - AO356_26715 0.70 +0.6
6,082,582 + AO356_26715 0.77 -0.0
6,082,583 - AO356_26715 0.77 -0.2
6,082,583 - AO356_26715 0.77 +1.1
6,082,617 - AO356_26715 0.79 +0.4
6,082,876 - +1.1
6,083,072 + -1.7
6,083,072 + -0.3
6,083,073 - +0.7
6,083,073 - +0.4
6,083,073 - -0.0
6,083,110 + -0.7
6,083,110 + +0.5
6,083,111 - -1.2
6,083,184 + +0.4
6,083,591 - AO356_26720 0.45 -1.4
6,083,855 - AO356_26720 0.74 +0.4

Or see this region's nucleotide sequence