Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26705 and AO356_26710 are separated by 46 nucleotides AO356_26710 and AO356_26715 are separated by 92 nucleotides AO356_26715 and AO356_26720 are separated by 287 nucleotides
AO356_26705: AO356_26705 - AsnC family transcriptional regulator, at 6,080,308 to 6,080,796
_26705
AO356_26710: AO356_26710 - 2-haloalkanoic acid dehalogenase, at 6,080,843 to 6,081,499
_26710
AO356_26715: AO356_26715 - 4-aminobutyrate aminotransferase, at 6,081,592 to 6,082,884
_26715
AO356_26720: AO356_26720 - hydroxyacid dehydrogenase, at 6,083,172 to 6,084,098
_26720
Position (kb)
6081
6082
6083 Strain fitness (log2 ratio)
-2
-1
0
1 at 6080.631 kb on - strand, within AO356_26705 at 6080.640 kb on + strand, within AO356_26705 at 6080.641 kb on - strand, within AO356_26705 at 6080.642 kb on + strand, within AO356_26705 at 6080.757 kb on + strand at 6080.777 kb on - strand at 6080.785 kb on + strand at 6080.785 kb on + strand at 6080.836 kb on - strand at 6080.913 kb on + strand, within AO356_26710 at 6080.913 kb on + strand, within AO356_26710 at 6081.141 kb on + strand, within AO356_26710 at 6081.141 kb on + strand, within AO356_26710 at 6081.171 kb on + strand, within AO356_26710 at 6081.171 kb on + strand, within AO356_26710 at 6081.334 kb on - strand, within AO356_26710 at 6081.334 kb on - strand, within AO356_26710 at 6081.541 kb on + strand at 6082.409 kb on + strand, within AO356_26715 at 6082.449 kb on + strand, within AO356_26715 at 6082.449 kb on + strand, within AO356_26715 at 6082.449 kb on + strand, within AO356_26715 at 6082.450 kb on - strand, within AO356_26715 at 6082.498 kb on - strand, within AO356_26715 at 6082.582 kb on + strand, within AO356_26715 at 6082.583 kb on - strand, within AO356_26715 at 6082.583 kb on - strand, within AO356_26715 at 6082.617 kb on - strand, within AO356_26715 at 6082.876 kb on - strand at 6083.072 kb on + strand at 6083.072 kb on + strand at 6083.073 kb on - strand at 6083.073 kb on - strand at 6083.073 kb on - strand at 6083.110 kb on + strand at 6083.110 kb on + strand at 6083.111 kb on - strand at 6083.184 kb on + strand at 6083.591 kb on - strand, within AO356_26720 at 6083.855 kb on - strand, within AO356_26720
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 6,080,631 - AO356_26705 0.66 -0.7 6,080,640 + AO356_26705 0.68 +0.9 6,080,641 - AO356_26705 0.68 -1.7 6,080,642 + AO356_26705 0.68 +0.8 6,080,757 + -0.2 6,080,777 - -0.5 6,080,785 + +0.7 6,080,785 + +0.8 6,080,836 - -0.3 6,080,913 + AO356_26710 0.11 +0.3 6,080,913 + AO356_26710 0.11 -0.0 6,081,141 + AO356_26710 0.45 -0.2 6,081,141 + AO356_26710 0.45 -2.0 6,081,171 + AO356_26710 0.50 -0.7 6,081,171 + AO356_26710 0.50 -1.7 6,081,334 - AO356_26710 0.75 +0.1 6,081,334 - AO356_26710 0.75 -1.0 6,081,541 + -2.5 6,082,409 + AO356_26715 0.63 -0.3 6,082,449 + AO356_26715 0.66 -0.4 6,082,449 + AO356_26715 0.66 +0.3 6,082,449 + AO356_26715 0.66 +0.3 6,082,450 - AO356_26715 0.66 +0.6 6,082,498 - AO356_26715 0.70 +0.6 6,082,582 + AO356_26715 0.77 -0.0 6,082,583 - AO356_26715 0.77 -0.2 6,082,583 - AO356_26715 0.77 +1.1 6,082,617 - AO356_26715 0.79 +0.4 6,082,876 - +1.1 6,083,072 + -1.7 6,083,072 + -0.3 6,083,073 - +0.7 6,083,073 - +0.4 6,083,073 - -0.0 6,083,110 + -0.7 6,083,110 + +0.5 6,083,111 - -1.2 6,083,184 + +0.4 6,083,591 - AO356_26720 0.45 -1.4 6,083,855 - AO356_26720 0.74 +0.4
Or see this region's nucleotide sequence