Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20155

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20140 and AO356_20145 are separated by 105 nucleotidesAO356_20145 and AO356_20150 are separated by 13 nucleotidesAO356_20150 and AO356_20155 are separated by 34 nucleotidesAO356_20155 and AO356_20160 are separated by 123 nucleotides AO356_20140: AO356_20140 - septum formation inhibitor Maf, at 4,507,992 to 4,508,570 _20140 AO356_20145: AO356_20145 - metal-binding protein, at 4,508,676 to 4,509,203 _20145 AO356_20150: AO356_20150 - 50S ribosomal protein L32, at 4,509,217 to 4,509,399 _20150 AO356_20155: AO356_20155 - phosphate acyltransferase, at 4,509,434 to 4,510,414 _20155 AO356_20160: AO356_20160 - malonyl CoA-ACP transacylase, at 4,510,538 to 4,511,476 _20160 Position (kb) 4509 4510 4511Strain fitness (log2 ratio) -3 -2 -1 0 1at 4508.536 kb on + strandat 4508.537 kb on - strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.560 kb on - strandat 4509.493 kb on + strandat 4509.494 kb on - strandat 4509.752 kb on + strand, within AO356_20155at 4509.753 kb on - strand, within AO356_20155at 4509.753 kb on - strand, within AO356_20155at 4510.028 kb on + strand, within AO356_20155at 4510.028 kb on + strand, within AO356_20155at 4510.029 kb on - strand, within AO356_20155at 4510.029 kb on - strand, within AO356_20155at 4510.029 kb on - strand, within AO356_20155at 4510.058 kb on + strand, within AO356_20155at 4510.058 kb on + strand, within AO356_20155at 4510.105 kb on + strand, within AO356_20155at 4510.285 kb on + strand, within AO356_20155at 4510.285 kb on + strand, within AO356_20155at 4510.285 kb on + strand, within AO356_20155at 4510.286 kb on + strand, within AO356_20155at 4510.286 kb on - strand, within AO356_20155at 4510.412 kb on + strandat 4510.436 kb on + strandat 4510.436 kb on + strandat 4510.436 kb on + strandat 4510.436 kb on + strandat 4510.436 kb on + strandat 4510.437 kb on - strandat 4510.437 kb on - strandat 4510.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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4,508,536 + -0.1
4,508,537 - +1.0
4,508,556 + +0.2
4,508,556 + +0.7
4,508,556 + -1.8
4,508,556 + +0.7
4,508,556 + +0.8
4,508,556 + -0.8
4,508,557 - -0.3
4,508,557 - +0.7
4,508,557 - +0.7
4,508,557 - -0.3
4,508,559 + +0.1
4,508,559 + -0.1
4,508,559 + +0.3
4,508,559 + +1.4
4,508,560 - +0.7
4,509,493 + -3.1
4,509,494 - -1.9
4,509,752 + AO356_20155 0.32 -2.9
4,509,753 - AO356_20155 0.33 +0.1
4,509,753 - AO356_20155 0.33 -1.9
4,510,028 + AO356_20155 0.61 -2.3
4,510,028 + AO356_20155 0.61 -1.3
4,510,029 - AO356_20155 0.61 -0.1
4,510,029 - AO356_20155 0.61 -1.1
4,510,029 - AO356_20155 0.61 -0.3
4,510,058 + AO356_20155 0.64 +0.3
4,510,058 + AO356_20155 0.64 -0.9
4,510,105 + AO356_20155 0.68 -1.3
4,510,285 + AO356_20155 0.87 -1.3
4,510,285 + AO356_20155 0.87 -1.7
4,510,285 + AO356_20155 0.87 -1.9
4,510,286 + AO356_20155 0.87 -3.5
4,510,286 - AO356_20155 0.87 -1.6
4,510,412 + -0.8
4,510,436 + -1.1
4,510,436 + +1.0
4,510,436 + -0.3
4,510,436 + +0.7
4,510,436 + +0.1
4,510,437 - -0.3
4,510,437 - -0.3
4,510,437 - -2.7

Or see this region's nucleotide sequence