Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15290

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15285 and AO356_15290 are separated by 196 nucleotidesAO356_15290 and AO356_15295 are separated by 1 nucleotidesAO356_15295 and AO356_15300 are separated by 71 nucleotides AO356_15285: AO356_15285 - 3-methyladenine DNA glycosylase, at 3,462,847 to 3,463,524 _15285 AO356_15290: AO356_15290 - gamma-glutamyl phosphate reductase, at 3,463,721 to 3,464,992 _15290 AO356_15295: AO356_15295 - nicotinate-nucleotide adenylyltransferase, at 3,464,994 to 3,465,680 _15295 AO356_15300: AO356_15300 - ribosome silencing factor, at 3,465,752 to 3,466,246 _15300 Position (kb) 3463 3464 3465Strain fitness (log2 ratio) -2 -1 0 1 2at 3462.863 kb on + strandat 3462.921 kb on - strand, within AO356_15285at 3462.941 kb on + strand, within AO356_15285at 3462.941 kb on + strand, within AO356_15285at 3462.942 kb on - strand, within AO356_15285at 3462.942 kb on - strand, within AO356_15285at 3462.942 kb on - strand, within AO356_15285at 3462.972 kb on + strand, within AO356_15285at 3462.972 kb on + strand, within AO356_15285at 3462.973 kb on - strand, within AO356_15285at 3463.162 kb on + strand, within AO356_15285at 3463.163 kb on - strand, within AO356_15285at 3463.163 kb on - strand, within AO356_15285at 3463.163 kb on - strand, within AO356_15285at 3463.163 kb on - strand, within AO356_15285at 3463.163 kb on - strand, within AO356_15285at 3463.198 kb on - strand, within AO356_15285at 3463.283 kb on + strand, within AO356_15285at 3463.283 kb on + strand, within AO356_15285at 3463.284 kb on - strand, within AO356_15285at 3463.284 kb on - strand, within AO356_15285at 3463.284 kb on - strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.286 kb on + strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.287 kb on - strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.290 kb on + strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.291 kb on - strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.292 kb on + strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.293 kb on - strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.373 kb on + strand, within AO356_15285at 3463.374 kb on - strand, within AO356_15285at 3463.374 kb on - strand, within AO356_15285at 3463.374 kb on - strand, within AO356_15285at 3463.374 kb on - strand, within AO356_15285at 3463.374 kb on - strand, within AO356_15285at 3463.376 kb on + strand, within AO356_15285at 3463.376 kb on + strand, within AO356_15285at 3463.377 kb on - strand, within AO356_15285at 3463.377 kb on - strand, within AO356_15285at 3463.531 kb on - strandat 3463.562 kb on + strandat 3463.563 kb on - strandat 3463.623 kb on + strandat 3463.623 kb on + strandat 3463.623 kb on + strandat 3463.624 kb on - strandat 3463.660 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.680 kb on + strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.681 kb on - strandat 3463.682 kb on + strandat 3463.682 kb on + strandat 3463.742 kb on + strandat 3463.742 kb on + strandat 3463.743 kb on - strandat 3464.096 kb on + strand, within AO356_15290at 3464.096 kb on + strand, within AO356_15290at 3464.423 kb on + strand, within AO356_15290at 3464.423 kb on + strand, within AO356_15290at 3464.424 kb on - strand, within AO356_15290at 3464.483 kb on + strand, within AO356_15290at 3464.887 kb on + strandat 3464.893 kb on + strandat 3464.893 kb on + strandat 3464.945 kb on + strandat 3464.945 kb on + strandat 3464.945 kb on + strandat 3464.945 kb on + strandat 3464.945 kb on + strandat 3464.945 kb on + strandat 3465.139 kb on + strand, within AO356_15295at 3465.139 kb on + strand, within AO356_15295at 3465.285 kb on + strand, within AO356_15295at 3465.285 kb on + strand, within AO356_15295at 3465.285 kb on + strand, within AO356_15295at 3465.296 kb on + strand, within AO356_15295at 3465.602 kb on + strand, within AO356_15295at 3465.602 kb on + strand, within AO356_15295at 3465.642 kb on + strandat 3465.642 kb on + strandat 3465.642 kb on + strandat 3465.731 kb on + strandat 3465.731 kb on + strandat 3465.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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3,462,863 + +0.3
3,462,921 - AO356_15285 0.11 +0.1
3,462,941 + AO356_15285 0.14 -0.7
3,462,941 + AO356_15285 0.14 +1.5
3,462,942 - AO356_15285 0.14 +1.5
3,462,942 - AO356_15285 0.14 +0.4
3,462,942 - AO356_15285 0.14 +0.1
3,462,972 + AO356_15285 0.18 +0.3
3,462,972 + AO356_15285 0.18 -0.1
3,462,973 - AO356_15285 0.19 +0.1
3,463,162 + AO356_15285 0.46 -0.1
3,463,163 - AO356_15285 0.47 -1.0
3,463,163 - AO356_15285 0.47 -0.6
3,463,163 - AO356_15285 0.47 +0.1
3,463,163 - AO356_15285 0.47 +0.0
3,463,163 - AO356_15285 0.47 +0.4
3,463,198 - AO356_15285 0.52 +0.6
3,463,283 + AO356_15285 0.64 -0.5
3,463,283 + AO356_15285 0.64 +0.7
3,463,284 - AO356_15285 0.64 +0.8
3,463,284 - AO356_15285 0.64 -0.3
3,463,284 - AO356_15285 0.64 +0.0
3,463,286 + AO356_15285 0.65 +0.1
3,463,286 + AO356_15285 0.65 +0.6
3,463,286 + AO356_15285 0.65 -0.5
3,463,286 + AO356_15285 0.65 -0.4
3,463,286 + AO356_15285 0.65 -0.7
3,463,286 + AO356_15285 0.65 +0.2
3,463,286 + AO356_15285 0.65 -0.1
3,463,286 + AO356_15285 0.65 -1.7
3,463,286 + AO356_15285 0.65 +0.5
3,463,286 + AO356_15285 0.65 +0.4
3,463,286 + AO356_15285 0.65 +0.9
3,463,286 + AO356_15285 0.65 +0.4
3,463,286 + AO356_15285 0.65 -0.5
3,463,287 - AO356_15285 0.65 +0.6
3,463,287 - AO356_15285 0.65 +0.2
3,463,287 - AO356_15285 0.65 -0.6
3,463,287 - AO356_15285 0.65 +0.8
3,463,287 - AO356_15285 0.65 -1.1
3,463,287 - AO356_15285 0.65 -0.9
3,463,287 - AO356_15285 0.65 +1.4
3,463,287 - AO356_15285 0.65 +0.5
3,463,287 - AO356_15285 0.65 -0.4
3,463,290 + AO356_15285 0.65 +0.4
3,463,290 + AO356_15285 0.65 +1.0
3,463,290 + AO356_15285 0.65 +0.1
3,463,290 + AO356_15285 0.65 +0.9
3,463,290 + AO356_15285 0.65 +0.9
3,463,290 + AO356_15285 0.65 +1.1
3,463,290 + AO356_15285 0.65 +0.3
3,463,290 + AO356_15285 0.65 +0.9
3,463,290 + AO356_15285 0.65 -0.1
3,463,290 + AO356_15285 0.65 -0.1
3,463,290 + AO356_15285 0.65 +0.1
3,463,290 + AO356_15285 0.65 -1.2
3,463,290 + AO356_15285 0.65 -1.2
3,463,290 + AO356_15285 0.65 -0.2
3,463,290 + AO356_15285 0.65 +0.6
3,463,290 + AO356_15285 0.65 +0.1
3,463,290 + AO356_15285 0.65 +0.5
3,463,290 + AO356_15285 0.65 +0.2
3,463,290 + AO356_15285 0.65 +0.2
3,463,290 + AO356_15285 0.65 +0.2
3,463,290 + AO356_15285 0.65 +0.7
3,463,290 + AO356_15285 0.65 -0.0
3,463,290 + AO356_15285 0.65 +2.0
3,463,290 + AO356_15285 0.65 -0.5
3,463,290 + AO356_15285 0.65 -1.1
3,463,290 + AO356_15285 0.65 +1.3
3,463,291 - AO356_15285 0.65 +0.5
3,463,291 - AO356_15285 0.65 +0.2
3,463,291 - AO356_15285 0.65 -0.2
3,463,291 - AO356_15285 0.65 +0.6
3,463,291 - AO356_15285 0.65 +0.4
3,463,291 - AO356_15285 0.65 -0.4
3,463,291 - AO356_15285 0.65 -0.2
3,463,291 - AO356_15285 0.65 +1.5
3,463,291 - AO356_15285 0.65 +0.5
3,463,291 - AO356_15285 0.65 -0.1
3,463,291 - AO356_15285 0.65 +0.7
3,463,291 - AO356_15285 0.65 -0.0
3,463,291 - AO356_15285 0.65 +0.2
3,463,291 - AO356_15285 0.65 +0.4
3,463,291 - AO356_15285 0.65 +1.2
3,463,291 - AO356_15285 0.65 -0.8
3,463,292 + AO356_15285 0.66 +1.0
3,463,292 + AO356_15285 0.66 +0.9
3,463,292 + AO356_15285 0.66 +1.3
3,463,292 + AO356_15285 0.66 -0.3
3,463,292 + AO356_15285 0.66 -0.3
3,463,292 + AO356_15285 0.66 -0.3
3,463,292 + AO356_15285 0.66 +0.7
3,463,292 + AO356_15285 0.66 +0.4
3,463,292 + AO356_15285 0.66 -0.9
3,463,292 + AO356_15285 0.66 -1.3
3,463,292 + AO356_15285 0.66 -1.1
3,463,292 + AO356_15285 0.66 -1.0
3,463,292 + AO356_15285 0.66 -1.0
3,463,292 + AO356_15285 0.66 +0.9
3,463,292 + AO356_15285 0.66 +0.1
3,463,292 + AO356_15285 0.66 +1.0
3,463,292 + AO356_15285 0.66 -0.8
3,463,292 + AO356_15285 0.66 +0.1
3,463,292 + AO356_15285 0.66 +0.3
3,463,292 + AO356_15285 0.66 +1.6
3,463,292 + AO356_15285 0.66 +0.7
3,463,292 + AO356_15285 0.66 -0.7
3,463,292 + AO356_15285 0.66 +0.9
3,463,292 + AO356_15285 0.66 -1.1
3,463,292 + AO356_15285 0.66 +0.6
3,463,292 + AO356_15285 0.66 -1.4
3,463,292 + AO356_15285 0.66 +0.9
3,463,292 + AO356_15285 0.66 +0.9
3,463,292 + AO356_15285 0.66 -0.9
3,463,292 + AO356_15285 0.66 +1.1
3,463,293 - AO356_15285 0.66 +0.3
3,463,293 - AO356_15285 0.66 +0.5
3,463,293 - AO356_15285 0.66 +1.4
3,463,293 - AO356_15285 0.66 -0.6
3,463,293 - AO356_15285 0.66 -0.3
3,463,293 - AO356_15285 0.66 -0.5
3,463,293 - AO356_15285 0.66 -1.1
3,463,293 - AO356_15285 0.66 -0.1
3,463,293 - AO356_15285 0.66 +1.1
3,463,293 - AO356_15285 0.66 -0.9
3,463,293 - AO356_15285 0.66 +0.7
3,463,293 - AO356_15285 0.66 -0.6
3,463,293 - AO356_15285 0.66 +0.4
3,463,293 - AO356_15285 0.66 +0.3
3,463,293 - AO356_15285 0.66 +1.5
3,463,293 - AO356_15285 0.66 -0.1
3,463,293 - AO356_15285 0.66 -0.5
3,463,293 - AO356_15285 0.66 +0.7
3,463,293 - AO356_15285 0.66 +0.6
3,463,293 - AO356_15285 0.66 +1.2
3,463,293 - AO356_15285 0.66 +0.5
3,463,293 - AO356_15285 0.66 +0.3
3,463,293 - AO356_15285 0.66 +0.9
3,463,293 - AO356_15285 0.66 +2.2
3,463,293 - AO356_15285 0.66 +0.9
3,463,293 - AO356_15285 0.66 +0.4
3,463,373 + AO356_15285 0.78 -0.5
3,463,373 + AO356_15285 0.78 -0.5
3,463,373 + AO356_15285 0.78 +0.3
3,463,373 + AO356_15285 0.78 -0.4
3,463,373 + AO356_15285 0.78 -0.7
3,463,373 + AO356_15285 0.78 +1.9
3,463,374 - AO356_15285 0.78 -0.4
3,463,374 - AO356_15285 0.78 -0.9
3,463,374 - AO356_15285 0.78 +0.7
3,463,374 - AO356_15285 0.78 +0.1
3,463,374 - AO356_15285 0.78 -2.4
3,463,376 + AO356_15285 0.78 +0.8
3,463,376 + AO356_15285 0.78 -0.3
3,463,377 - AO356_15285 0.78 +0.7
3,463,377 - AO356_15285 0.78 -0.4
3,463,531 - -0.4
3,463,562 + -1.1
3,463,563 - +0.5
3,463,623 + -0.2
3,463,623 + -0.7
3,463,623 + +0.3
3,463,624 - +0.6
3,463,660 + -0.7
3,463,680 + +0.5
3,463,680 + -0.9
3,463,680 + -0.9
3,463,680 + +1.1
3,463,680 + -0.3
3,463,680 + +0.2
3,463,680 + +1.0
3,463,680 + +0.6
3,463,681 - -1.7
3,463,681 - -0.1
3,463,681 - -1.7
3,463,681 - -2.1
3,463,681 - +0.9
3,463,681 - +1.2
3,463,681 - -2.4
3,463,681 - -0.5
3,463,681 - -1.4
3,463,681 - +0.5
3,463,681 - -0.1
3,463,682 + +2.0
3,463,682 + +1.2
3,463,742 + -1.1
3,463,742 + +0.2
3,463,743 - -0.1
3,464,096 + AO356_15290 0.29 -0.1
3,464,096 + AO356_15290 0.29 -0.4
3,464,423 + AO356_15290 0.55 -0.5
3,464,423 + AO356_15290 0.55 -1.3
3,464,424 - AO356_15290 0.55 -1.1
3,464,483 + AO356_15290 0.60 -0.6
3,464,887 + -0.6
3,464,893 + -0.4
3,464,893 + -0.4
3,464,945 + -0.2
3,464,945 + -1.1
3,464,945 + -0.1
3,464,945 + +1.0
3,464,945 + -0.5
3,464,945 + -0.3
3,465,139 + AO356_15295 0.21 +0.9
3,465,139 + AO356_15295 0.21 -0.3
3,465,285 + AO356_15295 0.42 -1.7
3,465,285 + AO356_15295 0.42 +0.3
3,465,285 + AO356_15295 0.42 +0.2
3,465,296 + AO356_15295 0.44 -0.1
3,465,602 + AO356_15295 0.89 -1.1
3,465,602 + AO356_15295 0.89 -0.5
3,465,642 + -0.7
3,465,642 + -0.7
3,465,642 + -1.7
3,465,731 + -0.7
3,465,731 + -0.8
3,465,731 + -0.9

Or see this region's nucleotide sequence