Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06000 and AO356_06005 are separated by 74 nucleotides AO356_06005 and AO356_06010 are separated by 52 nucleotides
AO356_06000: AO356_06000 - outer membrane protein assembly factor BamA, at 1,329,231 to 1,331,606
_06000
AO356_06005: AO356_06005 - zinc metallopeptidase RseP, at 1,331,681 to 1,333,033
_06005
AO356_06010: AO356_06010 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,333,086 to 1,334,276
_06010
Position (kb)
1331
1332
1333
1334 Strain fitness (log2 ratio)
-2
-1
0
1 at 1331.751 kb on - strand at 1331.809 kb on - strand at 1331.870 kb on - strand, within AO356_06005 at 1331.881 kb on - strand, within AO356_06005 at 1331.881 kb on - strand, within AO356_06005 at 1332.237 kb on - strand, within AO356_06005 at 1332.237 kb on - strand, within AO356_06005 at 1332.745 kb on + strand, within AO356_06005 at 1332.831 kb on + strand, within AO356_06005 at 1332.832 kb on - strand, within AO356_06005 at 1332.832 kb on - strand, within AO356_06005 at 1332.832 kb on - strand, within AO356_06005 at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.018 kb on + strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.019 kb on - strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.020 kb on + strand at 1333.021 kb on - strand at 1333.021 kb on - strand at 1333.021 kb on - strand at 1333.021 kb on - strand at 1333.021 kb on - strand at 1333.021 kb on - strand at 1333.076 kb on + strand at 1333.076 kb on + strand at 1333.076 kb on + strand at 1333.076 kb on + strand at 1333.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 1,331,751 - -0.8 1,331,809 - +0.4 1,331,870 - AO356_06005 0.14 -1.8 1,331,881 - AO356_06005 0.15 -0.9 1,331,881 - AO356_06005 0.15 -0.5 1,332,237 - AO356_06005 0.41 -0.2 1,332,237 - AO356_06005 0.41 -0.6 1,332,745 + AO356_06005 0.79 -0.9 1,332,831 + AO356_06005 0.85 -1.2 1,332,832 - AO356_06005 0.85 -0.2 1,332,832 - AO356_06005 0.85 -0.4 1,332,832 - AO356_06005 0.85 -1.2 1,333,018 + -0.5 1,333,018 + +0.1 1,333,018 + +1.4 1,333,018 + +0.1 1,333,018 + -0.5 1,333,018 + -0.8 1,333,018 + -1.2 1,333,019 - +0.8 1,333,019 - -1.7 1,333,019 - -0.5 1,333,019 - -0.8 1,333,019 - -0.0 1,333,019 - -0.8 1,333,019 - -1.5 1,333,019 - -1.0 1,333,019 - -0.9 1,333,019 - -0.5 1,333,019 - +0.6 1,333,020 + -0.8 1,333,020 + -1.5 1,333,020 + -2.1 1,333,020 + -0.6 1,333,020 + +0.6 1,333,020 + +0.4 1,333,020 + -0.6 1,333,020 + +0.1 1,333,021 - -0.8 1,333,021 - +0.8 1,333,021 - +0.4 1,333,021 - -0.9 1,333,021 - +0.5 1,333,021 - -0.4 1,333,076 + -0.2 1,333,076 + -0.9 1,333,076 + -0.2 1,333,076 + -1.3 1,333,077 - +0.3
Or see this region's nucleotide sequence