Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06005

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06000 and AO356_06005 are separated by 74 nucleotidesAO356_06005 and AO356_06010 are separated by 52 nucleotides AO356_06000: AO356_06000 - outer membrane protein assembly factor BamA, at 1,329,231 to 1,331,606 _06000 AO356_06005: AO356_06005 - zinc metallopeptidase RseP, at 1,331,681 to 1,333,033 _06005 AO356_06010: AO356_06010 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,333,086 to 1,334,276 _06010 Position (kb) 1331 1332 1333 1334Strain fitness (log2 ratio) -2 -1 0 1at 1331.751 kb on - strandat 1331.809 kb on - strandat 1331.870 kb on - strand, within AO356_06005at 1331.881 kb on - strand, within AO356_06005at 1331.881 kb on - strand, within AO356_06005at 1332.237 kb on - strand, within AO356_06005at 1332.237 kb on - strand, within AO356_06005at 1332.745 kb on + strand, within AO356_06005at 1332.831 kb on + strand, within AO356_06005at 1332.832 kb on - strand, within AO356_06005at 1332.832 kb on - strand, within AO356_06005at 1332.832 kb on - strand, within AO356_06005at 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.018 kb on + strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.019 kb on - strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.020 kb on + strandat 1333.021 kb on - strandat 1333.021 kb on - strandat 1333.021 kb on - strandat 1333.021 kb on - strandat 1333.021 kb on - strandat 1333.021 kb on - strandat 1333.076 kb on + strandat 1333.076 kb on + strandat 1333.076 kb on + strandat 1333.076 kb on + strandat 1333.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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1,331,751 - -0.8
1,331,809 - +0.4
1,331,870 - AO356_06005 0.14 -1.8
1,331,881 - AO356_06005 0.15 -0.9
1,331,881 - AO356_06005 0.15 -0.5
1,332,237 - AO356_06005 0.41 -0.2
1,332,237 - AO356_06005 0.41 -0.6
1,332,745 + AO356_06005 0.79 -0.9
1,332,831 + AO356_06005 0.85 -1.2
1,332,832 - AO356_06005 0.85 -0.2
1,332,832 - AO356_06005 0.85 -0.4
1,332,832 - AO356_06005 0.85 -1.2
1,333,018 + -0.5
1,333,018 + +0.1
1,333,018 + +1.4
1,333,018 + +0.1
1,333,018 + -0.5
1,333,018 + -0.8
1,333,018 + -1.2
1,333,019 - +0.8
1,333,019 - -1.7
1,333,019 - -0.5
1,333,019 - -0.8
1,333,019 - -0.0
1,333,019 - -0.8
1,333,019 - -1.5
1,333,019 - -1.0
1,333,019 - -0.9
1,333,019 - -0.5
1,333,019 - +0.6
1,333,020 + -0.8
1,333,020 + -1.5
1,333,020 + -2.1
1,333,020 + -0.6
1,333,020 + +0.6
1,333,020 + +0.4
1,333,020 + -0.6
1,333,020 + +0.1
1,333,021 - -0.8
1,333,021 - +0.8
1,333,021 - +0.4
1,333,021 - -0.9
1,333,021 - +0.5
1,333,021 - -0.4
1,333,076 + -0.2
1,333,076 + -0.9
1,333,076 + -0.2
1,333,076 + -1.3
1,333,077 - +0.3

Or see this region's nucleotide sequence