Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04160 and AO356_04165 are separated by 44 nucleotides AO356_04165 and AO356_04170 are separated by 206 nucleotides AO356_04170 and AO356_04175 are separated by 501 nucleotides
AO356_04160: AO356_04160 - hypothetical protein, at 935,097 to 935,369
_04160
AO356_04165: AO356_04165 - hypothetical protein, at 935,414 to 935,974
_04165
AO356_04170: AO356_04170 - hypothetical protein, at 936,181 to 936,360
_04170
AO356_04175: AO356_04175 - hypothetical protein, at 936,862 to 937,338
_04175
Position (kb) 936
937 Strain fitness (log2 ratio) -1
0
1
2 at 935.291 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.387 kb on + strand at 935.387 kb on + strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.403 kb on + strand at 935.403 kb on + strand at 935.412 kb on - strand at 935.415 kb on + strand at 935.444 kb on + strand at 935.445 kb on - strand at 935.554 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.688 kb on - strand, within AO356_04165 at 935.691 kb on + strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.722 kb on + strand, within AO356_04165 at 935.723 kb on - strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165 at 935.884 kb on - strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 936.262 kb on - strand, within AO356_04170 at 936.927 kb on + strand, within AO356_04175 at 936.928 kb on - strand, within AO356_04175 at 936.968 kb on - strand, within AO356_04175 at 937.023 kb on + strand, within AO356_04175 at 937.050 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.272 kb on + strand, within AO356_04175 at 937.311 kb on + strand at 937.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 935,291 - AO356_04160 0.71 -0.7 935,300 - AO356_04160 0.74 -0.7 935,300 - AO356_04160 0.74 +1.3 935,300 - AO356_04160 0.74 -0.3 935,300 - AO356_04160 0.74 -0.4 935,300 - AO356_04160 0.74 -0.1 935,387 + +1.3 935,387 + -0.4 935,388 - -0.1 935,388 - +0.2 935,388 - -0.0 935,388 - +0.5 935,388 - -0.0 935,403 + -0.6 935,403 + +0.3 935,412 - -0.1 935,415 + +0.9 935,444 + +0.0 935,445 - +0.6 935,554 + AO356_04165 0.25 -0.1 935,687 + AO356_04165 0.49 +0.7 935,687 + AO356_04165 0.49 +0.5 935,687 + AO356_04165 0.49 +0.5 935,688 - AO356_04165 0.49 -0.3 935,691 + AO356_04165 0.49 -0.2 935,692 - AO356_04165 0.50 +0.2 935,692 - AO356_04165 0.50 +0.1 935,722 + AO356_04165 0.55 +0.4 935,723 - AO356_04165 0.55 -0.6 935,724 + AO356_04165 0.55 +0.9 935,724 + AO356_04165 0.55 -0.1 935,725 - AO356_04165 0.55 +1.4 935,725 - AO356_04165 0.55 +0.7 935,748 + AO356_04165 0.60 +0.9 935,748 + AO356_04165 0.60 +0.4 935,884 - AO356_04165 0.84 -0.2 935,886 + AO356_04165 0.84 +0.2 935,886 + AO356_04165 0.84 +2.7 935,887 - AO356_04165 0.84 +0.3 935,887 - AO356_04165 0.84 +1.1 936,262 - AO356_04170 0.45 +1.1 936,927 + AO356_04175 0.14 +0.1 936,928 - AO356_04175 0.14 +0.4 936,968 - AO356_04175 0.22 -0.0 937,023 + AO356_04175 0.34 -0.3 937,050 + AO356_04175 0.39 +1.0 937,181 + AO356_04175 0.67 -0.2 937,181 + AO356_04175 0.67 +0.5 937,181 + AO356_04175 0.67 +1.1 937,182 - AO356_04175 0.67 +0.7 937,182 - AO356_04175 0.67 +0.4 937,182 - AO356_04175 0.67 +0.7 937,272 + AO356_04175 0.86 +0.2 937,311 + -0.3 937,312 - +0.7
Or see this region's nucleotide sequence