Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03620

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03610 and AO356_03615 are separated by 387 nucleotidesAO356_03615 and AO356_03620 are separated by 14 nucleotidesAO356_03620 and AO356_03625 overlap by 8 nucleotidesAO356_03625 and AO356_03630 overlap by 4 nucleotidesAO356_03630 and AO356_03635 overlap by 4 nucleotides AO356_03610: AO356_03610 - hypothetical protein, at 806,970 to 809,063 _03610 AO356_03615: AO356_03615 - hypothetical protein, at 809,451 to 809,858 _03615 AO356_03620: AO356_03620 - cytochrome C, at 809,873 to 811,075 _03620 AO356_03625: AO356_03625 - cytochrome C, at 811,068 to 811,541 _03625 AO356_03630: AO356_03630 - thiol:disulfide interchange protein, at 811,538 to 812,074 _03630 AO356_03635: AO356_03635 - cytochrome C biogenesis protein CcmF, at 812,071 to 814,059 _03635 Position (kb) 809 810 811 812Strain fitness (log2 ratio) -2 -1 0 1 2at 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.947 kb on + strandat 808.948 kb on - strandat 808.948 kb on - strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.984 kb on + strandat 808.985 kb on - strandat 809.071 kb on - strandat 809.181 kb on - strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.195 kb on - strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.315 kb on - strandat 809.332 kb on + strandat 809.333 kb on - strandat 809.555 kb on - strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.562 kb on - strand, within AO356_03615at 809.572 kb on + strand, within AO356_03615at 809.573 kb on - strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.602 kb on + strand, within AO356_03615at 809.602 kb on + strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.841 kb on - strandat 809.874 kb on + strandat 810.367 kb on - strand, within AO356_03620at 810.492 kb on + strand, within AO356_03620at 810.493 kb on - strand, within AO356_03620at 810.615 kb on + strand, within AO356_03620at 810.616 kb on - strand, within AO356_03620at 810.631 kb on + strand, within AO356_03620at 810.948 kb on + strand, within AO356_03620at 811.086 kb on - strandat 811.145 kb on + strand, within AO356_03625at 811.146 kb on - strand, within AO356_03625at 811.146 kb on - strand, within AO356_03625at 811.570 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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808,918 + -1.3
808,918 + +1.1
808,918 + -0.1
808,918 + -0.4
808,918 + +0.6
808,919 - -0.0
808,919 - +0.2
808,919 - -1.4
808,919 - -0.1
808,919 - +0.3
808,919 - -0.0
808,919 - +0.1
808,919 - +1.8
808,919 - +0.6
808,947 + +0.3
808,948 - +0.3
808,948 - +0.6
808,952 + +0.6
808,952 + +0.3
808,952 + +0.1
808,952 + +0.3
808,952 + +0.7
808,952 + -0.2
808,953 - +0.2
808,953 - -0.4
808,953 - -0.7
808,953 - +1.4
808,984 + -0.1
808,985 - -0.2
809,071 - -0.2
809,181 - -1.4
809,194 + -0.0
809,194 + -0.6
809,194 + +1.1
809,194 + +1.2
809,195 - +0.6
809,314 + +0.2
809,314 + -0.1
809,314 + -0.8
809,314 + +0.4
809,315 - +0.6
809,332 + +0.1
809,333 - -0.0
809,555 - AO356_03615 0.25 -0.3
809,557 + AO356_03615 0.26 +0.2
809,557 + AO356_03615 0.26 -0.4
809,557 + AO356_03615 0.26 -1.9
809,557 + AO356_03615 0.26 +0.6
809,557 + AO356_03615 0.26 +0.4
809,557 + AO356_03615 0.26 -0.4
809,558 - AO356_03615 0.26 -0.1
809,558 - AO356_03615 0.26 +1.5
809,558 - AO356_03615 0.26 +0.0
809,558 - AO356_03615 0.26 +0.1
809,558 - AO356_03615 0.26 -0.8
809,558 - AO356_03615 0.26 -0.8
809,558 - AO356_03615 0.26 +0.3
809,558 - AO356_03615 0.26 -0.1
809,561 + AO356_03615 0.27 -0.2
809,561 + AO356_03615 0.27 +0.8
809,561 + AO356_03615 0.27 +1.1
809,562 - AO356_03615 0.27 -0.3
809,572 + AO356_03615 0.30 +0.3
809,573 - AO356_03615 0.30 -0.0
809,579 + AO356_03615 0.31 -0.5
809,579 + AO356_03615 0.31 +0.4
809,579 + AO356_03615 0.31 +0.2
809,579 + AO356_03615 0.31 +0.4
809,579 + AO356_03615 0.31 -0.2
809,579 + AO356_03615 0.31 -0.4
809,579 + AO356_03615 0.31 +0.2
809,580 - AO356_03615 0.32 +0.3
809,580 - AO356_03615 0.32 +0.4
809,580 - AO356_03615 0.32 +0.5
809,580 - AO356_03615 0.32 +0.8
809,580 - AO356_03615 0.32 -0.4
809,580 - AO356_03615 0.32 -0.5
809,602 + AO356_03615 0.37 +0.1
809,602 + AO356_03615 0.37 +0.6
809,603 - AO356_03615 0.37 -1.6
809,603 - AO356_03615 0.37 -0.3
809,603 - AO356_03615 0.37 +0.2
809,603 - AO356_03615 0.37 -0.6
809,841 - -0.8
809,874 + +1.5
810,367 - AO356_03620 0.41 -0.2
810,492 + AO356_03620 0.51 +0.1
810,493 - AO356_03620 0.52 -0.8
810,615 + AO356_03620 0.62 -1.5
810,616 - AO356_03620 0.62 -0.8
810,631 + AO356_03620 0.63 -0.4
810,948 + AO356_03620 0.89 -1.9
811,086 - -0.0
811,145 + AO356_03625 0.16 -1.4
811,146 - AO356_03625 0.16 -0.4
811,146 - AO356_03625 0.16 -0.9
811,570 - -0.4

Or see this region's nucleotide sequence