Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02270

Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02265 and AO356_02270 are separated by 168 nucleotidesAO356_02270 and AO356_02275 are separated by 10 nucleotidesAO356_02275 and AO356_02280 are separated by 11 nucleotides AO356_02265: AO356_02265 - glyceraldehyde-3-phosphate dehydrogenase, at 486,206 to 487,669 _02265 AO356_02270: AO356_02270 - transcription-repair coupling factor, at 487,838 to 491,287 _02270 AO356_02275: AO356_02275 - hypothetical protein, at 491,298 to 491,864 _02275 AO356_02280: AO356_02280 - helicase, at 491,876 to 494,569 _02280 Position (kb) 487 488 489 490 491 492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 486.935 kb on + strand, within AO356_02265at 486.970 kb on + strand, within AO356_02265at 486.976 kb on - strand, within AO356_02265at 486.976 kb on - strand, within AO356_02265at 486.985 kb on - strand, within AO356_02265at 486.985 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.012 kb on - strand, within AO356_02265at 487.536 kb on + strandat 487.537 kb on - strandat 487.671 kb on + strandat 487.691 kb on + strandat 487.692 kb on - strandat 487.697 kb on - strandat 487.762 kb on + strandat 487.879 kb on + strandat 487.879 kb on + strandat 487.879 kb on + strandat 487.880 kb on - strandat 487.880 kb on - strandat 487.957 kb on + strandat 487.957 kb on + strandat 487.958 kb on - strandat 487.958 kb on - strandat 488.069 kb on + strandat 488.178 kb on + strandat 488.178 kb on + strandat 488.179 kb on - strandat 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.307 kb on - strand, within AO356_02270at 488.375 kb on + strand, within AO356_02270at 488.612 kb on + strand, within AO356_02270at 488.612 kb on + strand, within AO356_02270at 488.615 kb on + strand, within AO356_02270at 488.615 kb on + strand, within AO356_02270at 488.616 kb on - strand, within AO356_02270at 488.657 kb on + strand, within AO356_02270at 488.658 kb on - strand, within AO356_02270at 488.776 kb on - strand, within AO356_02270at 489.321 kb on - strand, within AO356_02270at 489.380 kb on + strand, within AO356_02270at 489.401 kb on + strand, within AO356_02270at 489.401 kb on + strand, within AO356_02270at 489.401 kb on + strand, within AO356_02270at 489.402 kb on - strand, within AO356_02270at 489.557 kb on + strand, within AO356_02270at 489.557 kb on + strand, within AO356_02270at 489.557 kb on + strand, within AO356_02270at 489.557 kb on + strand, within AO356_02270at 489.557 kb on + strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.558 kb on - strand, within AO356_02270at 489.612 kb on - strand, within AO356_02270at 489.612 kb on - strand, within AO356_02270at 489.839 kb on + strand, within AO356_02270at 489.839 kb on + strand, within AO356_02270at 489.839 kb on + strand, within AO356_02270at 489.839 kb on + strand, within AO356_02270at 489.839 kb on + strand, within AO356_02270at 489.840 kb on - strand, within AO356_02270at 489.840 kb on - strand, within AO356_02270at 490.280 kb on + strand, within AO356_02270at 490.280 kb on + strand, within AO356_02270at 490.280 kb on + strand, within AO356_02270at 490.281 kb on - strand, within AO356_02270at 490.281 kb on - strand, within AO356_02270at 490.281 kb on - strand, within AO356_02270at 490.281 kb on - strand, within AO356_02270at 490.283 kb on + strand, within AO356_02270at 490.283 kb on + strand, within AO356_02270at 490.283 kb on + strand, within AO356_02270at 490.283 kb on + strand, within AO356_02270at 490.284 kb on - strand, within AO356_02270at 490.416 kb on - strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.580 kb on + strand, within AO356_02270at 490.581 kb on - strand, within AO356_02270at 490.648 kb on + strand, within AO356_02270at 490.766 kb on + strand, within AO356_02270at 490.766 kb on + strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.889 kb on + strand, within AO356_02270at 490.922 kb on + strand, within AO356_02270at 490.923 kb on - strand, within AO356_02270at 491.174 kb on + strandat 491.174 kb on + strandat 491.175 kb on - strandat 491.247 kb on + strandat 491.247 kb on + strandat 491.248 kb on - strandat 491.367 kb on + strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.529 kb on + strand, within AO356_02275at 491.530 kb on - strand, within AO356_02275at 491.750 kb on + strand, within AO356_02275at 491.876 kb on - strandat 492.042 kb on - strandat 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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486,935 + AO356_02265 0.50 -2.4
486,970 + AO356_02265 0.52 -0.4
486,976 - AO356_02265 0.53 -1.4
486,976 - AO356_02265 0.53 -0.4
486,985 - AO356_02265 0.53 -0.4
486,985 - AO356_02265 0.53 -2.0
487,012 - AO356_02265 0.55 -4.1
487,012 - AO356_02265 0.55 -1.6
487,012 - AO356_02265 0.55 -3.0
487,536 + -0.4
487,537 - -1.7
487,671 + -1.0
487,691 + +0.2
487,692 - +0.4
487,697 - +1.0
487,762 + -0.4
487,879 + +1.0
487,879 + -0.2
487,879 + +2.2
487,880 - -0.7
487,880 - -0.7
487,957 + -0.2
487,957 + -0.8
487,958 - -0.6
487,958 - -1.0
488,069 + -2.0
488,178 + +1.0
488,178 + -1.7
488,179 - -1.0
488,307 - AO356_02270 0.14 -0.9
488,307 - AO356_02270 0.14 -0.8
488,307 - AO356_02270 0.14 -0.9
488,307 - AO356_02270 0.14 -0.3
488,375 + AO356_02270 0.16 -0.6
488,612 + AO356_02270 0.22 -0.8
488,612 + AO356_02270 0.22 -0.7
488,615 + AO356_02270 0.23 -0.9
488,615 + AO356_02270 0.23 -1.8
488,616 - AO356_02270 0.23 +0.5
488,657 + AO356_02270 0.24 -1.4
488,658 - AO356_02270 0.24 -1.7
488,776 - AO356_02270 0.27 -0.4
489,321 - AO356_02270 0.43 -0.6
489,380 + AO356_02270 0.45 -0.2
489,401 + AO356_02270 0.45 -1.8
489,401 + AO356_02270 0.45 -1.1
489,401 + AO356_02270 0.45 -1.2
489,402 - AO356_02270 0.45 -0.7
489,557 + AO356_02270 0.50 -2.5
489,557 + AO356_02270 0.50 -2.0
489,557 + AO356_02270 0.50 -1.3
489,557 + AO356_02270 0.50 -1.0
489,557 + AO356_02270 0.50 -1.0
489,558 - AO356_02270 0.50 -1.4
489,558 - AO356_02270 0.50 -0.4
489,558 - AO356_02270 0.50 -0.2
489,558 - AO356_02270 0.50 +0.3
489,558 - AO356_02270 0.50 -1.1
489,558 - AO356_02270 0.50 -1.1
489,612 - AO356_02270 0.51 -1.4
489,612 - AO356_02270 0.51 -2.0
489,839 + AO356_02270 0.58 -1.5
489,839 + AO356_02270 0.58 -0.9
489,839 + AO356_02270 0.58 +0.4
489,839 + AO356_02270 0.58 +0.5
489,839 + AO356_02270 0.58 -0.9
489,840 - AO356_02270 0.58 -0.4
489,840 - AO356_02270 0.58 -0.4
490,280 + AO356_02270 0.71 -2.0
490,280 + AO356_02270 0.71 -1.7
490,280 + AO356_02270 0.71 -0.2
490,281 - AO356_02270 0.71 -0.7
490,281 - AO356_02270 0.71 -1.0
490,281 - AO356_02270 0.71 -0.9
490,281 - AO356_02270 0.71 -1.4
490,283 + AO356_02270 0.71 -2.6
490,283 + AO356_02270 0.71 -0.2
490,283 + AO356_02270 0.71 +0.6
490,283 + AO356_02270 0.71 -0.8
490,284 - AO356_02270 0.71 +0.6
490,416 - AO356_02270 0.75 -2.0
490,574 + AO356_02270 0.79 +2.2
490,574 + AO356_02270 0.79 -0.3
490,574 + AO356_02270 0.79 -1.1
490,574 + AO356_02270 0.79 -0.7
490,575 - AO356_02270 0.79 +0.1
490,575 - AO356_02270 0.79 -0.7
490,575 - AO356_02270 0.79 -2.3
490,575 - AO356_02270 0.79 -0.5
490,575 - AO356_02270 0.79 -1.6
490,580 + AO356_02270 0.79 -0.4
490,581 - AO356_02270 0.80 -0.4
490,648 + AO356_02270 0.81 -2.1
490,766 + AO356_02270 0.85 -0.5
490,766 + AO356_02270 0.85 -0.7
490,767 - AO356_02270 0.85 -1.5
490,767 - AO356_02270 0.85 -0.4
490,767 - AO356_02270 0.85 -2.2
490,889 + AO356_02270 0.88 +0.2
490,922 + AO356_02270 0.89 -1.4
490,923 - AO356_02270 0.89 -3.0
491,174 + -1.7
491,174 + -1.1
491,175 - -0.7
491,247 + -1.3
491,247 + -1.2
491,248 - -1.3
491,367 + AO356_02275 0.12 +1.8
491,368 - AO356_02275 0.12 -0.4
491,368 - AO356_02275 0.12 -0.8
491,368 - AO356_02275 0.12 -0.9
491,529 + AO356_02275 0.41 -0.1
491,530 - AO356_02275 0.41 +1.3
491,750 + AO356_02275 0.80 -0.2
491,876 - +0.3
492,042 - +1.2
492,276 + AO356_02280 0.15 +1.8
492,276 + AO356_02280 0.15 -0.3
492,276 + AO356_02280 0.15 +0.7
492,276 + AO356_02280 0.15 -1.8
492,276 + AO356_02280 0.15 +0.3
492,276 + AO356_02280 0.15 +0.0
492,276 + AO356_02280 0.15 +0.9
492,277 - AO356_02280 0.15 -0.9
492,277 - AO356_02280 0.15 +1.0
492,277 - AO356_02280 0.15 +0.6
492,277 - AO356_02280 0.15 -0.5
492,277 - AO356_02280 0.15 -1.1
492,277 - AO356_02280 0.15 -0.5
492,277 - AO356_02280 0.15 +0.6
492,277 - AO356_02280 0.15 +0.5
492,277 - AO356_02280 0.15 -0.4
492,277 - AO356_02280 0.15 -0.4
492,277 - AO356_02280 0.15 -2.4
492,277 - AO356_02280 0.15 +0.4

Or see this region's nucleotide sequence