Experiment: BG11 with Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisC and Synpcc7942_1110 are separated by 160 nucleotides Synpcc7942_1110 and Synpcc7942_1111 are separated by 336 nucleotides
Synpcc7942_1109: hisC - threonine phosphate decarboxylase, at 1,125,667 to 1,126,740
hisC
Synpcc7942_1110: Synpcc7942_1110 - response regulator receiver domain protein (CheY-like), at 1,126,901 to 1,127,527
_1110
Synpcc7942_1111: Synpcc7942_1111 - serine/threonine protein kinase, at 1,127,864 to 1,129,447
_1111
Position (kb)
1126
1127
1128 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1126.719 kb on + strand at 1126.724 kb on + strand at 1126.732 kb on - strand at 1126.743 kb on + strand at 1126.751 kb on + strand at 1126.762 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.764 kb on + strand at 1126.772 kb on - strand at 1126.772 kb on - strand at 1126.774 kb on - strand at 1126.784 kb on - strand at 1126.784 kb on - strand at 1126.807 kb on - strand at 1126.812 kb on - strand at 1126.812 kb on - strand at 1126.838 kb on + strand at 1126.856 kb on + strand at 1126.856 kb on + strand at 1126.884 kb on + strand at 1126.904 kb on - strand at 1126.934 kb on + strand at 1126.945 kb on + strand at 1126.950 kb on + strand at 1126.984 kb on - strand, within Synpcc7942_1110 at 1126.984 kb on - strand, within Synpcc7942_1110 at 1126.989 kb on - strand, within Synpcc7942_1110 at 1126.996 kb on - strand, within Synpcc7942_1110 at 1127.006 kb on - strand, within Synpcc7942_1110 at 1127.036 kb on + strand, within Synpcc7942_1110 at 1127.081 kb on - strand, within Synpcc7942_1110 at 1127.088 kb on + strand, within Synpcc7942_1110 at 1127.090 kb on + strand, within Synpcc7942_1110 at 1127.098 kb on - strand, within Synpcc7942_1110 at 1127.100 kb on + strand, within Synpcc7942_1110 at 1127.108 kb on - strand, within Synpcc7942_1110 at 1127.134 kb on + strand, within Synpcc7942_1110 at 1127.134 kb on + strand at 1127.136 kb on - strand, within Synpcc7942_1110 at 1127.147 kb on - strand, within Synpcc7942_1110 at 1127.186 kb on + strand, within Synpcc7942_1110 at 1127.196 kb on - strand, within Synpcc7942_1110 at 1127.198 kb on + strand, within Synpcc7942_1110 at 1127.199 kb on + strand, within Synpcc7942_1110 at 1127.203 kb on + strand, within Synpcc7942_1110 at 1127.206 kb on - strand, within Synpcc7942_1110 at 1127.224 kb on - strand, within Synpcc7942_1110 at 1127.228 kb on - strand, within Synpcc7942_1110 at 1127.242 kb on - strand, within Synpcc7942_1110 at 1127.249 kb on - strand, within Synpcc7942_1110 at 1127.253 kb on + strand, within Synpcc7942_1110 at 1127.259 kb on - strand, within Synpcc7942_1110 at 1127.260 kb on + strand, within Synpcc7942_1110 at 1127.267 kb on - strand, within Synpcc7942_1110 at 1127.274 kb on + strand, within Synpcc7942_1110 at 1127.280 kb on - strand, within Synpcc7942_1110 at 1127.320 kb on - strand, within Synpcc7942_1110 at 1127.328 kb on + strand, within Synpcc7942_1110 at 1127.328 kb on + strand, within Synpcc7942_1110 at 1127.332 kb on + strand, within Synpcc7942_1110 at 1127.332 kb on + strand, within Synpcc7942_1110 at 1127.340 kb on - strand at 1127.351 kb on + strand, within Synpcc7942_1110 at 1127.351 kb on + strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.359 kb on - strand, within Synpcc7942_1110 at 1127.364 kb on - strand, within Synpcc7942_1110 at 1127.377 kb on + strand, within Synpcc7942_1110 at 1127.408 kb on + strand, within Synpcc7942_1110 at 1127.413 kb on - strand, within Synpcc7942_1110 at 1127.418 kb on - strand, within Synpcc7942_1110 at 1127.423 kb on - strand, within Synpcc7942_1110 at 1127.430 kb on - strand, within Synpcc7942_1110 at 1127.439 kb on - strand, within Synpcc7942_1110 at 1127.503 kb on - strand at 1127.518 kb on - strand at 1127.534 kb on - strand at 1127.536 kb on + strand at 1127.551 kb on + strand at 1127.574 kb on - strand at 1127.585 kb on - strand at 1127.588 kb on + strand at 1127.596 kb on - strand at 1127.596 kb on - strand at 1127.625 kb on - strand at 1127.630 kb on - strand at 1127.687 kb on - strand at 1127.760 kb on - strand at 1127.779 kb on + strand at 1127.849 kb on + strand at 1127.849 kb on + strand at 1127.886 kb on + strand at 1127.916 kb on - strand at 1127.919 kb on + strand at 1127.937 kb on - strand at 1127.961 kb on - strand at 1127.979 kb on + strand at 1127.979 kb on + strand at 1127.986 kb on - strand at 1127.987 kb on - strand at 1127.996 kb on + strand at 1128.001 kb on + strand at 1128.009 kb on - strand at 1128.009 kb on - strand at 1128.009 kb on - strand at 1128.033 kb on - strand, within Synpcc7942_1111 at 1128.071 kb on + strand, within Synpcc7942_1111 at 1128.083 kb on + strand, within Synpcc7942_1111 at 1128.108 kb on + strand, within Synpcc7942_1111 at 1128.116 kb on - strand, within Synpcc7942_1111 at 1128.150 kb on + strand, within Synpcc7942_1111 at 1128.193 kb on + strand, within Synpcc7942_1111 at 1128.228 kb on + strand, within Synpcc7942_1111 at 1128.231 kb on - strand, within Synpcc7942_1111 at 1128.231 kb on - strand, within Synpcc7942_1111 at 1128.238 kb on - strand, within Synpcc7942_1111 at 1128.241 kb on - strand, within Synpcc7942_1111 at 1128.243 kb on - strand, within Synpcc7942_1111 at 1128.248 kb on - strand, within Synpcc7942_1111 at 1128.248 kb on - strand, within Synpcc7942_1111 at 1128.282 kb on + strand, within Synpcc7942_1111 at 1128.282 kb on + strand, within Synpcc7942_1111 at 1128.282 kb on + strand, within Synpcc7942_1111 at 1128.282 kb on + strand, within Synpcc7942_1111 at 1128.282 kb on + strand at 1128.282 kb on + strand at 1128.282 kb on + strand, within Synpcc7942_1111 at 1128.290 kb on - strand, within Synpcc7942_1111 at 1128.290 kb on - strand, within Synpcc7942_1111 at 1128.290 kb on - strand, within Synpcc7942_1111 at 1128.290 kb on - strand, within Synpcc7942_1111 at 1128.290 kb on - strand, within Synpcc7942_1111 at 1128.331 kb on - strand, within Synpcc7942_1111 at 1128.339 kb on + strand, within Synpcc7942_1111 at 1128.375 kb on + strand, within Synpcc7942_1111 at 1128.387 kb on + strand, within Synpcc7942_1111 at 1128.389 kb on + strand, within Synpcc7942_1111 at 1128.418 kb on - strand, within Synpcc7942_1111 at 1128.418 kb on - strand, within Synpcc7942_1111 at 1128.422 kb on + strand, within Synpcc7942_1111 at 1128.440 kb on - strand, within Synpcc7942_1111 at 1128.440 kb on - strand, within Synpcc7942_1111 at 1128.440 kb on - strand, within Synpcc7942_1111 at 1128.440 kb on - strand, within Synpcc7942_1111 at 1128.443 kb on + strand, within Synpcc7942_1111 at 1128.490 kb on + strand, within Synpcc7942_1111 at 1128.490 kb on + strand, within Synpcc7942_1111
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Bacitracin 0.0009765625 mg/ml remove 1,126,719 + -1.1 1,126,724 + -0.6 1,126,732 - -2.8 1,126,743 + +0.8 1,126,751 + -0.0 1,126,762 + -1.3 1,126,764 + -0.7 1,126,764 + +0.7 1,126,764 + -1.8 1,126,764 + -0.1 1,126,764 + -1.8 1,126,764 + +1.5 1,126,764 + -0.9 1,126,772 - -2.2 1,126,772 - -1.1 1,126,774 - +0.5 1,126,784 - +0.9 1,126,784 - -0.2 1,126,807 - +0.5 1,126,812 - +0.2 1,126,812 - -0.3 1,126,838 + -1.9 1,126,856 + +0.2 1,126,856 + -0.8 1,126,884 + +0.4 1,126,904 - +2.4 1,126,934 + -0.6 1,126,945 + -0.1 1,126,950 + -0.8 1,126,984 - Synpcc7942_1110 0.13 -1.2 1,126,984 - Synpcc7942_1110 0.13 +0.2 1,126,989 - Synpcc7942_1110 0.14 -0.5 1,126,996 - Synpcc7942_1110 0.15 +1.8 1,127,006 - Synpcc7942_1110 0.17 -0.8 1,127,036 + Synpcc7942_1110 0.22 +1.2 1,127,081 - Synpcc7942_1110 0.29 +1.6 1,127,088 + Synpcc7942_1110 0.30 +0.2 1,127,090 + Synpcc7942_1110 0.30 +1.7 1,127,098 - Synpcc7942_1110 0.31 +1.1 1,127,100 + Synpcc7942_1110 0.32 +2.8 1,127,108 - Synpcc7942_1110 0.33 +1.3 1,127,134 + Synpcc7942_1110 0.37 +3.0 1,127,134 + +1.2 1,127,136 - Synpcc7942_1110 0.37 +0.8 1,127,147 - Synpcc7942_1110 0.39 +1.5 1,127,186 + Synpcc7942_1110 0.45 +1.7 1,127,196 - Synpcc7942_1110 0.47 +1.8 1,127,198 + Synpcc7942_1110 0.47 +2.5 1,127,199 + Synpcc7942_1110 0.48 +1.1 1,127,203 + Synpcc7942_1110 0.48 +2.5 1,127,206 - Synpcc7942_1110 0.49 +3.3 1,127,224 - Synpcc7942_1110 0.52 -0.0 1,127,228 - Synpcc7942_1110 0.52 -0.2 1,127,242 - Synpcc7942_1110 0.54 +2.0 1,127,249 - Synpcc7942_1110 0.56 +2.8 1,127,253 + Synpcc7942_1110 0.56 +1.7 1,127,259 - Synpcc7942_1110 0.57 +1.0 1,127,260 + Synpcc7942_1110 0.57 +2.3 1,127,267 - Synpcc7942_1110 0.58 +1.0 1,127,274 + Synpcc7942_1110 0.59 +1.1 1,127,280 - Synpcc7942_1110 0.60 +1.9 1,127,320 - Synpcc7942_1110 0.67 +1.5 1,127,328 + Synpcc7942_1110 0.68 +2.6 1,127,328 + Synpcc7942_1110 0.68 +2.6 1,127,332 + Synpcc7942_1110 0.69 -2.5 1,127,332 + Synpcc7942_1110 0.69 +3.3 1,127,340 - -0.5 1,127,351 + Synpcc7942_1110 0.72 +0.3 1,127,351 + Synpcc7942_1110 0.72 +1.4 1,127,359 - Synpcc7942_1110 0.73 +1.8 1,127,359 - Synpcc7942_1110 0.73 +2.4 1,127,359 - Synpcc7942_1110 0.73 +0.0 1,127,359 - Synpcc7942_1110 0.73 +0.8 1,127,359 - Synpcc7942_1110 0.73 +2.0 1,127,359 - Synpcc7942_1110 0.73 +1.6 1,127,364 - Synpcc7942_1110 0.74 +2.3 1,127,377 + Synpcc7942_1110 0.76 +1.1 1,127,408 + Synpcc7942_1110 0.81 +1.6 1,127,413 - Synpcc7942_1110 0.82 +2.2 1,127,418 - Synpcc7942_1110 0.82 +1.6 1,127,423 - Synpcc7942_1110 0.83 +2.0 1,127,430 - Synpcc7942_1110 0.84 +1.5 1,127,439 - Synpcc7942_1110 0.86 +1.7 1,127,503 - -0.5 1,127,518 - +2.1 1,127,534 - -0.3 1,127,536 + -0.4 1,127,551 + -0.4 1,127,574 - +1.5 1,127,585 - +0.9 1,127,588 + -0.4 1,127,596 - +0.3 1,127,596 - -1.1 1,127,625 - -1.1 1,127,630 - +0.6 1,127,687 - -0.4 1,127,760 - +0.3 1,127,779 + +0.4 1,127,849 + +0.0 1,127,849 + -0.1 1,127,886 + +1.3 1,127,916 - +1.5 1,127,919 + +2.0 1,127,937 - +0.6 1,127,961 - +0.2 1,127,979 + +1.6 1,127,979 + -0.0 1,127,986 - -0.7 1,127,987 - -0.1 1,127,996 + +0.5 1,128,001 + +0.2 1,128,009 - -0.9 1,128,009 - +0.4 1,128,009 - -0.6 1,128,033 - Synpcc7942_1111 0.11 +0.6 1,128,071 + Synpcc7942_1111 0.13 +0.7 1,128,083 + Synpcc7942_1111 0.14 -0.0 1,128,108 + Synpcc7942_1111 0.15 -0.5 1,128,116 - Synpcc7942_1111 0.16 -0.4 1,128,150 + Synpcc7942_1111 0.18 +0.5 1,128,193 + Synpcc7942_1111 0.21 +0.2 1,128,228 + Synpcc7942_1111 0.23 -0.3 1,128,231 - Synpcc7942_1111 0.23 -0.5 1,128,231 - Synpcc7942_1111 0.23 -0.4 1,128,238 - Synpcc7942_1111 0.24 -0.8 1,128,241 - Synpcc7942_1111 0.24 +0.7 1,128,243 - Synpcc7942_1111 0.24 +0.2 1,128,248 - Synpcc7942_1111 0.24 +0.0 1,128,248 - Synpcc7942_1111 0.24 -0.1 1,128,282 + Synpcc7942_1111 0.26 -1.3 1,128,282 + Synpcc7942_1111 0.26 -0.1 1,128,282 + Synpcc7942_1111 0.26 +0.6 1,128,282 + Synpcc7942_1111 0.26 -0.7 1,128,282 + -0.5 1,128,282 + -1.2 1,128,282 + Synpcc7942_1111 0.26 +1.6 1,128,290 - Synpcc7942_1111 0.27 +0.9 1,128,290 - Synpcc7942_1111 0.27 -0.0 1,128,290 - Synpcc7942_1111 0.27 -2.9 1,128,290 - Synpcc7942_1111 0.27 -0.2 1,128,290 - Synpcc7942_1111 0.27 +0.2 1,128,331 - Synpcc7942_1111 0.29 +0.5 1,128,339 + Synpcc7942_1111 0.30 +0.8 1,128,375 + Synpcc7942_1111 0.32 +0.5 1,128,387 + Synpcc7942_1111 0.33 +0.6 1,128,389 + Synpcc7942_1111 0.33 +0.2 1,128,418 - Synpcc7942_1111 0.35 +1.3 1,128,418 - Synpcc7942_1111 0.35 -0.3 1,128,422 + Synpcc7942_1111 0.35 +0.5 1,128,440 - Synpcc7942_1111 0.36 +0.1 1,128,440 - Synpcc7942_1111 0.36 +0.5 1,128,440 - Synpcc7942_1111 0.36 +1.1 1,128,440 - Synpcc7942_1111 0.36 +0.2 1,128,443 + Synpcc7942_1111 0.37 -0.2 1,128,490 + Synpcc7942_1111 0.40 +0.1 1,128,490 + Synpcc7942_1111 0.40 -1.1
Or see this region's nucleotide sequence