Experiment: BG11 with Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eno and Synpcc7942_0640 are separated by 255 nucleotides Synpcc7942_0640 and sdhA are separated by 97 nucleotides
Synpcc7942_0639: eno - phosphopyruvate hydratase, at 630,677 to 631,969
eno
Synpcc7942_0640: Synpcc7942_0640 - ATPase, at 632,225 to 633,991
_0640
Synpcc7942_0641: sdhA - succinate dehydrogenase flavoprotein subunit, at 634,089 to 635,996
sdhA
Position (kb) 632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.940 kb on - strand at 631.947 kb on + strand at 631.947 kb on + strand at 631.955 kb on - strand at 631.970 kb on + strand at 631.970 kb on + strand at 632.024 kb on + strand at 632.030 kb on - strand at 632.036 kb on - strand at 632.066 kb on - strand at 632.096 kb on - strand at 632.162 kb on + strand at 632.203 kb on - strand at 632.275 kb on - strand at 632.353 kb on - strand at 632.358 kb on - strand at 632.390 kb on + strand at 632.398 kb on - strand at 632.440 kb on + strand, within Synpcc7942_0640 at 632.493 kb on - strand, within Synpcc7942_0640 at 632.552 kb on + strand, within Synpcc7942_0640 at 632.609 kb on + strand, within Synpcc7942_0640 at 632.692 kb on - strand, within Synpcc7942_0640 at 632.716 kb on + strand, within Synpcc7942_0640 at 632.770 kb on + strand, within Synpcc7942_0640 at 632.795 kb on - strand, within Synpcc7942_0640 at 632.911 kb on - strand, within Synpcc7942_0640 at 632.948 kb on - strand, within Synpcc7942_0640 at 632.997 kb on + strand, within Synpcc7942_0640 at 633.113 kb on - strand, within Synpcc7942_0640 at 633.155 kb on - strand, within Synpcc7942_0640 at 633.218 kb on + strand, within Synpcc7942_0640 at 633.277 kb on + strand, within Synpcc7942_0640 at 633.282 kb on + strand, within Synpcc7942_0640 at 633.292 kb on + strand, within Synpcc7942_0640 at 633.300 kb on - strand, within Synpcc7942_0640 at 633.300 kb on - strand at 633.448 kb on - strand, within Synpcc7942_0640 at 633.448 kb on - strand, within Synpcc7942_0640 at 633.450 kb on + strand, within Synpcc7942_0640 at 633.478 kb on - strand, within Synpcc7942_0640 at 633.478 kb on - strand, within Synpcc7942_0640 at 633.643 kb on + strand, within Synpcc7942_0640 at 633.675 kb on - strand, within Synpcc7942_0640 at 633.678 kb on + strand at 633.678 kb on + strand, within Synpcc7942_0640 at 633.688 kb on + strand, within Synpcc7942_0640 at 633.695 kb on + strand, within Synpcc7942_0640 at 633.703 kb on - strand, within Synpcc7942_0640 at 633.703 kb on - strand, within Synpcc7942_0640 at 633.728 kb on + strand, within Synpcc7942_0640 at 633.970 kb on - strand at 634.106 kb on + strand at 634.148 kb on + strand at 634.181 kb on + strand at 634.196 kb on - strand at 634.213 kb on + strand at 634.221 kb on - strand at 634.224 kb on - strand at 634.272 kb on + strand at 634.272 kb on + strand at 634.272 kb on + strand at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.298 kb on - strand, within sdhA at 634.304 kb on + strand, within sdhA at 634.431 kb on - strand, within sdhA at 634.431 kb on - strand, within sdhA at 634.469 kb on + strand, within sdhA at 634.474 kb on + strand, within sdhA at 634.482 kb on - strand, within sdhA at 634.484 kb on + strand, within sdhA at 634.484 kb on + strand, within sdhA at 634.515 kb on + strand, within sdhA at 634.530 kb on + strand, within sdhA at 634.530 kb on + strand, within sdhA at 634.540 kb on + strand, within sdhA at 634.565 kb on + strand, within sdhA at 634.573 kb on - strand, within sdhA at 634.583 kb on - strand, within sdhA at 634.597 kb on - strand, within sdhA at 634.600 kb on + strand, within sdhA at 634.600 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.623 kb on + strand, within sdhA at 634.633 kb on - strand, within sdhA at 634.648 kb on + strand, within sdhA at 634.668 kb on - strand, within sdhA at 634.673 kb on - strand, within sdhA at 634.689 kb on - strand, within sdhA at 634.742 kb on - strand, within sdhA at 634.743 kb on - strand, within sdhA at 634.769 kb on - strand, within sdhA at 634.792 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.804 kb on + strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.820 kb on + strand, within sdhA at 634.820 kb on + strand, within sdhA at 634.825 kb on + strand, within sdhA at 634.833 kb on - strand, within sdhA at 634.848 kb on - strand, within sdhA at 634.958 kb on + strand, within sdhA at 634.985 kb on - strand, within sdhA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Bacitracin 0.0009765625 mg/ml remove 631,932 + +0.6 631,932 + +1.2 631,932 + +1.8 631,932 + +0.7 631,932 + +0.5 631,940 - +0.5 631,947 + -1.0 631,947 + +1.0 631,955 - +0.4 631,970 + +0.3 631,970 + -0.5 632,024 + -0.4 632,030 - -0.9 632,036 - -0.3 632,066 - +0.7 632,096 - -0.2 632,162 + -0.2 632,203 - -0.5 632,275 - -1.1 632,353 - -2.7 632,358 - -2.1 632,390 + -0.3 632,398 - -1.3 632,440 + Synpcc7942_0640 0.12 -2.2 632,493 - Synpcc7942_0640 0.15 -3.2 632,552 + Synpcc7942_0640 0.19 +0.1 632,609 + Synpcc7942_0640 0.22 +0.1 632,692 - Synpcc7942_0640 0.26 +0.1 632,716 + Synpcc7942_0640 0.28 -0.0 632,770 + Synpcc7942_0640 0.31 -1.7 632,795 - Synpcc7942_0640 0.32 -1.4 632,911 - Synpcc7942_0640 0.39 -2.0 632,948 - Synpcc7942_0640 0.41 -2.3 632,997 + Synpcc7942_0640 0.44 -1.5 633,113 - Synpcc7942_0640 0.50 -1.7 633,155 - Synpcc7942_0640 0.53 -2.6 633,218 + Synpcc7942_0640 0.56 -3.0 633,277 + Synpcc7942_0640 0.60 -0.7 633,282 + Synpcc7942_0640 0.60 -0.5 633,292 + Synpcc7942_0640 0.60 -2.0 633,300 - Synpcc7942_0640 0.61 -1.9 633,300 - -0.2 633,448 - Synpcc7942_0640 0.69 -1.7 633,448 - Synpcc7942_0640 0.69 -3.3 633,450 + Synpcc7942_0640 0.69 -0.2 633,478 - Synpcc7942_0640 0.71 -0.7 633,478 - Synpcc7942_0640 0.71 -2.4 633,643 + Synpcc7942_0640 0.80 -1.0 633,675 - Synpcc7942_0640 0.82 -1.2 633,678 + -0.0 633,678 + Synpcc7942_0640 0.82 -2.2 633,688 + Synpcc7942_0640 0.83 -2.2 633,695 + Synpcc7942_0640 0.83 -0.4 633,703 - Synpcc7942_0640 0.84 -1.0 633,703 - Synpcc7942_0640 0.84 -1.0 633,728 + Synpcc7942_0640 0.85 -1.4 633,970 - -0.6 634,106 + -0.0 634,148 + +0.7 634,181 + -0.3 634,196 - +0.1 634,213 + +1.8 634,221 - -0.4 634,224 - +0.2 634,272 + -0.9 634,272 + +0.2 634,272 + +0.4 634,280 - sdhA Synpcc7942_0641 0.10 +0.7 634,280 - sdhA Synpcc7942_0641 0.10 +0.0 634,280 - sdhA Synpcc7942_0641 0.10 +0.4 634,280 - sdhA Synpcc7942_0641 0.10 +1.1 634,298 - sdhA Synpcc7942_0641 0.11 +0.2 634,304 + sdhA Synpcc7942_0641 0.11 -1.0 634,431 - sdhA Synpcc7942_0641 0.18 -0.4 634,431 - sdhA Synpcc7942_0641 0.18 +0.7 634,469 + sdhA Synpcc7942_0641 0.20 +0.5 634,474 + sdhA Synpcc7942_0641 0.20 +0.9 634,482 - sdhA Synpcc7942_0641 0.21 +0.5 634,484 + sdhA Synpcc7942_0641 0.21 -0.5 634,484 + sdhA Synpcc7942_0641 0.21 +1.0 634,515 + sdhA Synpcc7942_0641 0.22 -0.7 634,530 + sdhA Synpcc7942_0641 0.23 +0.7 634,530 + sdhA Synpcc7942_0641 0.23 +1.4 634,540 + sdhA Synpcc7942_0641 0.24 +0.6 634,565 + sdhA Synpcc7942_0641 0.25 -2.0 634,573 - sdhA Synpcc7942_0641 0.25 +1.2 634,583 - sdhA Synpcc7942_0641 0.26 +0.4 634,597 - sdhA Synpcc7942_0641 0.27 -0.7 634,600 + sdhA Synpcc7942_0641 0.27 +0.5 634,600 - sdhA Synpcc7942_0641 0.27 +0.1 634,608 - sdhA Synpcc7942_0641 0.27 -0.2 634,608 - sdhA Synpcc7942_0641 0.27 -0.2 634,608 - sdhA Synpcc7942_0641 0.27 +0.7 634,623 + sdhA Synpcc7942_0641 0.28 -2.4 634,633 - sdhA Synpcc7942_0641 0.29 +0.1 634,648 + sdhA Synpcc7942_0641 0.29 +0.5 634,668 - sdhA Synpcc7942_0641 0.30 +0.5 634,673 - sdhA Synpcc7942_0641 0.31 +0.3 634,689 - sdhA Synpcc7942_0641 0.31 -0.8 634,742 - sdhA Synpcc7942_0641 0.34 +0.6 634,743 - sdhA Synpcc7942_0641 0.34 +0.8 634,769 - sdhA Synpcc7942_0641 0.36 +0.0 634,792 - sdhA Synpcc7942_0641 0.37 -1.5 634,797 - sdhA Synpcc7942_0641 0.37 +0.6 634,797 - sdhA Synpcc7942_0641 0.37 -0.8 634,797 - sdhA Synpcc7942_0641 0.37 +1.1 634,804 + sdhA Synpcc7942_0641 0.37 +0.8 634,812 - sdhA Synpcc7942_0641 0.38 -0.0 634,812 - sdhA Synpcc7942_0641 0.38 -0.3 634,812 - sdhA Synpcc7942_0641 0.38 +0.2 634,820 + sdhA Synpcc7942_0641 0.38 -1.0 634,820 + sdhA Synpcc7942_0641 0.38 +1.4 634,825 + sdhA Synpcc7942_0641 0.39 -0.5 634,833 - sdhA Synpcc7942_0641 0.39 -0.0 634,848 - sdhA Synpcc7942_0641 0.40 -0.4 634,958 + sdhA Synpcc7942_0641 0.46 -0.3 634,985 - sdhA Synpcc7942_0641 0.47 -0.2
Or see this region's nucleotide sequence