Experiment: BG11 with Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0555 and srrB overlap by 4 nucleotides srrB and Synpcc7942_0557 are separated by 194 nucleotides Synpcc7942_0557 and Synpcc7942_0558 are separated by 77 nucleotides Synpcc7942_0558 and hslO are separated by 51 nucleotides
Synpcc7942_0555: Synpcc7942_0555 - zinc metalloprotease, at 537,790 to 538,509
_0555
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Synpcc7942_0557: Synpcc7942_0557 - hypothetical protein, at 539,414 to 539,605
_0557
Synpcc7942_0558: Synpcc7942_0558 - hypothetical protein, at 539,683 to 540,297
_0558
Synpcc7942_0559: hslO - Hsp33-like chaperonin, at 540,349 to 541,242
hslO
Position (kb) 539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 538.431 kb on - strand, within Synpcc7942_0555 at 538.504 kb on + strand at 538.504 kb on + strand at 538.576 kb on + strand at 538.597 kb on + strand, within srrB at 538.605 kb on - strand at 538.634 kb on - strand, within srrB at 538.667 kb on + strand, within srrB at 538.736 kb on - strand, within srrB at 538.772 kb on - strand, within srrB at 538.776 kb on + strand at 538.821 kb on + strand, within srrB at 538.824 kb on - strand, within srrB at 538.834 kb on - strand at 538.854 kb on + strand, within srrB at 538.886 kb on + strand, within srrB at 538.894 kb on - strand, within srrB at 538.918 kb on + strand, within srrB at 538.955 kb on - strand at 538.992 kb on + strand, within srrB at 539.027 kb on + strand, within srrB at 539.029 kb on + strand, within srrB at 539.051 kb on + strand, within srrB at 539.051 kb on + strand at 539.092 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.105 kb on - strand, within srrB at 539.110 kb on - strand, within srrB at 539.133 kb on - strand, within srrB at 539.147 kb on - strand, within srrB at 539.184 kb on + strand at 539.184 kb on + strand at 539.194 kb on - strand at 539.216 kb on + strand at 539.224 kb on - strand at 539.229 kb on - strand at 539.229 kb on - strand at 539.239 kb on + strand at 539.241 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.250 kb on + strand at 539.252 kb on - strand at 539.253 kb on + strand at 539.253 kb on + strand at 539.254 kb on - strand at 539.271 kb on - strand at 539.271 kb on - strand at 539.273 kb on + strand at 539.288 kb on - strand at 539.309 kb on + strand at 539.318 kb on + strand at 539.374 kb on - strand at 539.377 kb on + strand at 539.391 kb on - strand at 539.401 kb on + strand at 539.409 kb on + strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.414 kb on + strand at 539.459 kb on + strand, within Synpcc7942_0557 at 539.459 kb on + strand, within Synpcc7942_0557 at 539.467 kb on - strand, within Synpcc7942_0557 at 539.474 kb on - strand, within Synpcc7942_0557 at 539.626 kb on - strand at 539.638 kb on + strand at 539.646 kb on - strand at 539.670 kb on - strand at 539.670 kb on - strand at 539.714 kb on + strand at 539.742 kb on + strand at 539.801 kb on + strand, within Synpcc7942_0558 at 539.811 kb on - strand, within Synpcc7942_0558 at 539.835 kb on - strand, within Synpcc7942_0558 at 539.865 kb on + strand, within Synpcc7942_0558 at 539.960 kb on - strand, within Synpcc7942_0558 at 540.012 kb on + strand, within Synpcc7942_0558 at 540.059 kb on - strand, within Synpcc7942_0558 at 540.131 kb on + strand, within Synpcc7942_0558 at 540.225 kb on + strand, within Synpcc7942_0558 at 540.228 kb on - strand, within Synpcc7942_0558 at 540.230 kb on + strand, within Synpcc7942_0558 at 540.233 kb on - strand, within Synpcc7942_0558 at 540.270 kb on - strand at 540.296 kb on + strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.323 kb on - strand at 540.346 kb on + strand at 540.416 kb on + strand at 540.443 kb on + strand, within hslO at 540.443 kb on - strand, within hslO at 540.450 kb on - strand, within hslO at 540.451 kb on - strand, within hslO at 540.469 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.497 kb on + strand, within hslO at 540.524 kb on - strand, within hslO at 540.585 kb on + strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Bacitracin 0.0009765625 mg/ml remove 538,431 - Synpcc7942_0555 0.89 -0.2 538,504 + -1.8 538,504 + -1.2 538,576 + -0.8 538,597 + srrB Synpcc7942_0556 0.13 -0.2 538,605 - +0.8 538,634 - srrB Synpcc7942_0556 0.18 -0.8 538,667 + srrB Synpcc7942_0556 0.23 -2.3 538,736 - srrB Synpcc7942_0556 0.32 -0.5 538,772 - srrB Synpcc7942_0556 0.37 -1.4 538,776 + -0.2 538,821 + srrB Synpcc7942_0556 0.44 -0.2 538,824 - srrB Synpcc7942_0556 0.45 -2.0 538,834 - +1.4 538,854 + srrB Synpcc7942_0556 0.49 -0.9 538,886 + srrB Synpcc7942_0556 0.53 +0.8 538,894 - srrB Synpcc7942_0556 0.54 +0.0 538,918 + srrB Synpcc7942_0556 0.58 +0.5 538,955 - +0.8 538,992 + srrB Synpcc7942_0556 0.68 -1.5 539,027 + srrB Synpcc7942_0556 0.73 -0.3 539,029 + srrB Synpcc7942_0556 0.73 +0.0 539,051 + srrB Synpcc7942_0556 0.76 -0.8 539,051 + +0.2 539,092 + srrB Synpcc7942_0556 0.82 +0.2 539,096 + srrB Synpcc7942_0556 0.83 -0.1 539,096 + srrB Synpcc7942_0556 0.83 -0.6 539,105 - srrB Synpcc7942_0556 0.84 -3.0 539,110 - srrB Synpcc7942_0556 0.85 +0.0 539,133 - srrB Synpcc7942_0556 0.88 +1.8 539,147 - srrB Synpcc7942_0556 0.90 +0.2 539,184 + +1.8 539,184 + -0.4 539,194 - -1.8 539,216 + -0.1 539,224 - -1.0 539,229 - -0.4 539,229 - +0.8 539,239 + -1.4 539,241 - -0.2 539,244 + -1.0 539,244 + -0.3 539,244 + -1.0 539,250 + -1.0 539,252 - -0.5 539,253 + +0.8 539,253 + +0.2 539,254 - -0.8 539,271 - +0.5 539,271 - +0.2 539,273 + +0.8 539,288 - +0.5 539,309 + +0.2 539,318 + +2.1 539,374 - +0.2 539,377 + +1.8 539,391 - +0.6 539,401 + -0.8 539,409 + -0.5 539,409 - +0.3 539,409 - -0.7 539,409 - +0.1 539,414 + +0.4 539,459 + Synpcc7942_0557 0.23 -2.1 539,459 + Synpcc7942_0557 0.23 -2.8 539,467 - Synpcc7942_0557 0.28 -0.8 539,474 - Synpcc7942_0557 0.31 -0.4 539,626 - -2.0 539,638 + -2.0 539,646 - -1.0 539,670 - -3.0 539,670 - +0.5 539,714 + -0.6 539,742 + -0.3 539,801 + Synpcc7942_0558 0.19 +0.2 539,811 - Synpcc7942_0558 0.21 -1.6 539,835 - Synpcc7942_0558 0.25 -0.6 539,865 + Synpcc7942_0558 0.30 -0.8 539,960 - Synpcc7942_0558 0.45 -0.8 540,012 + Synpcc7942_0558 0.53 -0.2 540,059 - Synpcc7942_0558 0.61 +0.2 540,131 + Synpcc7942_0558 0.73 -1.0 540,225 + Synpcc7942_0558 0.88 -2.1 540,228 - Synpcc7942_0558 0.89 -2.0 540,230 + Synpcc7942_0558 0.89 -2.2 540,233 - Synpcc7942_0558 0.89 +1.8 540,270 - +1.6 540,296 + -2.6 540,304 - +0.9 540,304 - +1.8 540,323 - -2.2 540,346 + -0.0 540,416 + -0.3 540,443 + hslO Synpcc7942_0559 0.11 -0.4 540,443 - hslO Synpcc7942_0559 0.11 +0.7 540,450 - hslO Synpcc7942_0559 0.11 +1.5 540,451 - hslO Synpcc7942_0559 0.11 -0.1 540,469 - hslO Synpcc7942_0559 0.13 +0.7 540,479 - hslO Synpcc7942_0559 0.15 +0.1 540,479 - hslO Synpcc7942_0559 0.15 -0.9 540,479 - hslO Synpcc7942_0559 0.15 +0.5 540,497 + hslO Synpcc7942_0559 0.17 +1.1 540,524 - hslO Synpcc7942_0559 0.20 -1.0 540,585 + hslO Synpcc7942_0559 0.26 +1.5
Or see this region's nucleotide sequence