Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00450

Experiment: m.b. 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 5-Hydroxymethylfurfural 2.5 mM
49,333	+		PGA1_c00440	0.33	-0.3
49,338	+		PGA1_c00440	0.34	-0.8
49,356	-		PGA1_c00440	0.35	-2.0
49,356	-		PGA1_c00440	0.35	-1.2
49,451	+		PGA1_c00440	0.42	-1.2
49,453	+		PGA1_c00440	0.42	+0.1
49,453	+		PGA1_c00440	0.42	+0.1
49,506	-		PGA1_c00440	0.46	-0.1
49,549	+		PGA1_c00440	0.49	+0.1
49,549	+		PGA1_c00440	0.49	+2.2
49,549	+		PGA1_c00440	0.49	-0.7
49,549	+		PGA1_c00440	0.49	-2.9
49,549	+		PGA1_c00440	0.49	+0.3
49,557	-		PGA1_c00440	0.50	+0.2
49,557	-		PGA1_c00440	0.50	+0.3
49,600	-		PGA1_c00440	0.53	-1.9
49,621	-		PGA1_c00440	0.55	-0.0
49,629	+		PGA1_c00440	0.55	-0.1
49,633	+		PGA1_c00440	0.55	-0.2
49,637	-		PGA1_c00440	0.56	-1.7
49,637	-		PGA1_c00440	0.56	+0.2
49,693	+		PGA1_c00440	0.60	-1.2
49,698	-		PGA1_c00440	0.60	-0.4
49,712	+		PGA1_c00440	0.61	-1.5
49,716	+		PGA1_c00440	0.62	+0.3
49,771	-		PGA1_c00440	0.66	-0.7
49,777	-		PGA1_c00440	0.66	+0.3
49,833	-		PGA1_c00440	0.70	-1.0
49,844	+		PGA1_c00440	0.71	+0.9
49,852	-		PGA1_c00440	0.72	-1.0
49,862	+		PGA1_c00440	0.72	-1.2
49,878	-		PGA1_c00440	0.73	+0.3
49,878	-		PGA1_c00440	0.73	+0.9
49,878	-		PGA1_c00440	0.73	+0.5
49,906	+		PGA1_c00440	0.75	-0.7
49,909	-		PGA1_c00440	0.76	-0.1
49,914	-		PGA1_c00440	0.76	-1.1
49,914	-		PGA1_c00440	0.76	+1.4
49,916	+		PGA1_c00440	0.76	+0.1
49,919	-		PGA1_c00440	0.76	+1.2
49,921	+		PGA1_c00440	0.77	-0.3
49,924	-		PGA1_c00440	0.77	+0.3
49,968	-		PGA1_c00440	0.80	+0.5
49,968	-		PGA1_c00440	0.80	-1.4
49,979	+		PGA1_c00440	0.81	-0.0
50,000	-		PGA1_c00440	0.82	+1.2
50,035	+		PGA1_c00440	0.85	+0.1
50,044	-		PGA1_c00440	0.86	+0.3
50,044	-		PGA1_c00440	0.86	+1.0
50,045	+		PGA1_c00440	0.86	+0.1
50,045	+		PGA1_c00440	0.86	-1.5
50,045	+		PGA1_c00440	0.86	-0.4
50,046	+		PGA1_c00440	0.86	-0.4
50,053	-		PGA1_c00440	0.86	+0.5
50,058	+		PGA1_c00440	0.87	+0.5
50,058	+		PGA1_c00440	0.87	-0.4
50,060	+		PGA1_c00440	0.87	+0.9
50,060	+		PGA1_c00440	0.87	+0.5
50,066	-		PGA1_c00440	0.87	+1.1
50,066	-		PGA1_c00440	0.87	+0.2
50,105	+				-2.0
50,113	-				+0.3
50,113	-				+0.2
50,119	+				-0.1
50,120	-				-0.5
50,124	-				-3.2
50,130	+				-1.0
50,131	-				+0.3
50,132	-				+0.0
50,168	+				+0.5
50,178	+				+0.7
50,186	-				-0.2
50,196	-				+2.0
50,202	+				-0.9
50,219	+				-0.8
50,219	+				-0.3
50,227	-				+0.5
50,248	+				+0.9
50,268	-				+0.7
50,298	+				+0.5
50,303	+				+0.3
50,303	+				-0.0
50,303	+				-1.2
50,303	+				+0.9
50,303	+				-1.2
50,303	+				+0.5
50,303	+				+0.0
50,303	+				-1.9
50,303	+				-1.2
50,303	+				+0.5
50,303	+				-0.5
50,303	+				-1.2
50,303	+				+1.2
50,311	-				-0.2
50,311	-				+0.6
50,311	-				+0.9
50,311	-				-0.1
50,311	-				+0.8
50,311	-				+1.5
50,311	-				-2.2
50,311	-				+0.1
50,311	-				-0.5
50,311	-				-0.7
50,311	-				-0.1
50,311	-				-0.4
50,311	-				-1.2
50,311	-				+0.2
50,311	-				-0.4
50,363	+		PGA1_c00450	0.11	+0.3
50,363	+		PGA1_c00450	0.11	+0.1
50,371	+		PGA1_c00450	0.13	-2.2
50,384	-		PGA1_c00450	0.16	-0.8
50,467	-		PGA1_c00450	0.35	+0.5
50,482	-		PGA1_c00450	0.38	-1.0
50,557	+		PGA1_c00450	0.55	-0.2
50,562	+		PGA1_c00450	0.56	-0.3
50,603	+		PGA1_c00450	0.66	-1.6
50,629	-		PGA1_c00450	0.72	-0.7
50,677	-		PGA1_c00450	0.83	-2.2
50,704	+		PGA1_c00450	0.89	-0.5
50,709	+		PGA1_c00450	0.90	+0.7
50,722	-				-2.9
50,734	-				+1.1
50,776	+				+1.1
50,784	-				-1.3
50,794	+				+0.6
50,802	-				+0.6
50,857	+				-0.2
50,857	+				+0.0
50,859	+				-1.0
50,865	-				+0.0
50,867	-				+1.5
50,867	-				+0.4
50,867	-				-0.2
50,875	+				+1.2
50,881	+				+0.6
50,881	+				-0.3
50,883	-				-0.0
50,889	-				-0.2
50,916	-				-0.7
50,934	+		PGA1_c00460	0.10	+1.2
51,016	-		PGA1_c00460	0.17	-0.4
51,049	-		PGA1_c00460	0.20	-1.3
51,051	-		PGA1_c00460	0.20	+0.8
51,084	-		PGA1_c00460	0.22	+0.0
51,118	-		PGA1_c00460	0.25	-0.3
51,118	-		PGA1_c00460	0.25	+0.5
51,135	+		PGA1_c00460	0.27	-0.2
51,163	+		PGA1_c00460	0.29	+0.5
51,173	+		PGA1_c00460	0.30	-0.7
51,173	+		PGA1_c00460	0.30	+0.7
51,198	-		PGA1_c00460	0.32	-0.2
51,233	+		PGA1_c00460	0.35	+0.3
51,239	-		PGA1_c00460	0.35	+1.0
51,239	-		PGA1_c00460	0.35	-0.3
51,256	+		PGA1_c00460	0.37	-0.6
51,268	+		PGA1_c00460	0.38	+0.0
51,295	+		PGA1_c00460	0.40	-0.2
51,295	-		PGA1_c00460	0.40	-1.1
51,312	-		PGA1_c00460	0.41	-0.2
51,387	+		PGA1_c00460	0.47	+0.7
51,398	+		PGA1_c00460	0.48	-2.0
51,398	+		PGA1_c00460	0.48	-1.1
51,398	+		PGA1_c00460	0.48	-0.8
51,420	+		PGA1_c00460	0.50	-1.1
51,487	+		PGA1_c00460	0.56	+1.5
51,500	-		PGA1_c00460	0.57	-0.6
51,502	+		PGA1_c00460	0.57	-0.3
51,510	-		PGA1_c00460	0.58	-0.3
51,532	+		PGA1_c00460	0.59	-1.1
51,590	+		PGA1_c00460	0.64	-1.5
51,640	+		PGA1_c00460	0.68	+0.9
51,663	-		PGA1_c00460	0.70	-0.3
51,663	-		PGA1_c00460	0.70	+0.6
51,673	-		PGA1_c00460	0.71	-0.3
51,702	-		PGA1_c00460	0.73	-0.1
51,726	+		PGA1_c00460	0.75	+1.3
51,733	+		PGA1_c00460	0.76	-0.5
51,734	-		PGA1_c00460	0.76	-0.0
51,738	+		PGA1_c00460	0.76	+1.2
51,738	+		PGA1_c00460	0.76	-1.5
51,738	+		PGA1_c00460	0.76	+2.9
51,738	+		PGA1_c00460	0.76	-0.4
51,738	+		PGA1_c00460	0.76	-1.2
51,741	-		PGA1_c00460	0.77	-0.6
51,746	-		PGA1_c00460	0.77	+0.7