Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22480

Experiment: m.b. 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 5-Hydroxymethylfurfural 2.5 mM
2,331,464	-		PGA1_c22460	0.73	-0.3
2,331,464	-		PGA1_c22460	0.73	+0.6
2,331,490	+		PGA1_c22460	0.76	-0.1
2,331,509	+		PGA1_c22460	0.79	+0.2
2,331,543	-		PGA1_c22460	0.83	+0.9
2,331,560	+		PGA1_c22460	0.85	-0.9
2,331,565	+		PGA1_c22460	0.86	+0.5
2,331,568	+		PGA1_c22460	0.87	-2.1
2,331,573	-		PGA1_c22460	0.87	-0.1
2,331,581	-		PGA1_c22460	0.88	-1.5
2,331,586	-		PGA1_c22460	0.89	-0.7
2,331,625	-				-0.0
2,331,625	-				+0.8
2,331,711	+				-1.7
2,331,721	+				-0.9
2,331,729	-		PGA1_c22470	0.11	-0.7
2,331,736	+		PGA1_c22470	0.12	+0.0
2,331,782	-		PGA1_c22470	0.20	-0.5
2,331,845	+		PGA1_c22470	0.31	+0.6
2,331,860	+		PGA1_c22470	0.33	+0.6
2,331,868	-		PGA1_c22470	0.35	+0.2
2,331,868	-		PGA1_c22470	0.35	+0.1
2,331,924	-		PGA1_c22470	0.44	+0.4
2,331,939	+		PGA1_c22470	0.47	+0.6
2,331,947	-		PGA1_c22470	0.48	-0.7
2,331,947	-		PGA1_c22470	0.48	-0.4
2,331,954	+		PGA1_c22470	0.49	-0.4
2,331,997	+		PGA1_c22470	0.57	+0.5
2,332,002	+		PGA1_c22470	0.57	+0.3
2,332,002	+		PGA1_c22470	0.57	-0.3
2,332,005	-		PGA1_c22470	0.58	-0.6
2,332,010	-		PGA1_c22470	0.59	+0.6
2,332,010	-		PGA1_c22470	0.59	-0.8
2,332,010	-		PGA1_c22470	0.59	-1.2
2,332,094	-		PGA1_c22470	0.73	+0.5
2,332,094	-		PGA1_c22470	0.73	-1.7
2,332,099	+		PGA1_c22470	0.74	-0.4
2,332,135	+		PGA1_c22470	0.80	-1.3
2,332,135	+		PGA1_c22470	0.80	-0.5
2,332,135	+		PGA1_c22470	0.80	+0.3
2,332,135	+		PGA1_c22470	0.80	-0.3
2,332,135	+		PGA1_c22470	0.80	-0.4
2,332,135	+		PGA1_c22470	0.80	+0.4
2,332,135	+		PGA1_c22470	0.80	-0.1
2,332,135	+		PGA1_c22470	0.80	+1.2
2,332,135	+		PGA1_c22470	0.80	-0.8
2,332,143	-		PGA1_c22470	0.82	-0.6
2,332,143	-		PGA1_c22470	0.82	+1.2
2,332,143	-		PGA1_c22470	0.82	-0.1
2,332,143	-		PGA1_c22470	0.82	+0.4
2,332,143	-		PGA1_c22470	0.82	+0.1
2,332,143	-		PGA1_c22470	0.82	-1.1
2,332,143	-		PGA1_c22470	0.82	-1.1
2,332,143	-		PGA1_c22470	0.82	+1.1
2,332,143	-		PGA1_c22470	0.82	-0.3
2,332,143	-		PGA1_c22470	0.82	-0.3
2,332,143	-		PGA1_c22470	0.82	-0.1
2,332,143	-		PGA1_c22470	0.82	-0.6
2,332,143	-		PGA1_c22470	0.82	-0.7
2,332,152	+		PGA1_c22470	0.83	-0.1
2,332,153	-		PGA1_c22470	0.83	-2.2
2,332,173	-		PGA1_c22470	0.87	+1.1
2,332,175	+		PGA1_c22470	0.87	+0.1
2,332,188	-		PGA1_c22470	0.89	+1.0
2,332,197	+				-0.6
2,332,210	-				-0.2
2,332,243	+				-0.2
2,332,243	-				-0.0
2,332,255	+				+0.4
2,332,286	+				+0.5
2,332,286	+				+0.3
2,332,294	-				-0.3
2,332,315	+				-0.8
2,332,315	+				-0.4
2,332,315	+				+0.3
2,332,315	+				-0.7
2,332,315	-				-2.1
2,332,315	-				+0.2
2,332,317	+				-0.8
2,332,317	+				+0.4
2,332,323	-				+0.6
2,332,323	-				-0.3
2,332,325	+				-1.3
2,332,340	+				-0.1
2,332,345	+				-0.6
2,332,348	-				+0.7
2,332,348	-				-0.3
2,332,348	-				-0.3
2,332,350	+				+0.6
2,332,350	+				+0.5
2,332,350	+				+0.2
2,332,350	+				+1.4
2,332,350	+				-0.3
2,332,350	+				+1.5
2,332,350	+				+0.1
2,332,350	+				-0.7
2,332,350	+				-1.0
2,332,350	+				-0.2
2,332,350	+				+0.7
2,332,350	+				+0.3
2,332,350	+				-0.6
2,332,350	+				+0.8
2,332,350	+				+1.4
2,332,350	+				+0.2
2,332,350	+				-0.1
2,332,350	+				-0.8
2,332,350	+				+0.3
2,332,350	+				-2.7
2,332,350	+				-0.2
2,332,350	+				+0.4
2,332,350	+				-2.0
2,332,358	-				+0.3
2,332,358	-				+0.1
2,332,358	-				-1.5
2,332,358	-				+0.3
2,332,358	-				+0.9
2,332,358	-				+0.3
2,332,358	-				+0.3
2,332,358	-				-1.3
2,332,358	-				+0.3
2,332,358	-				-0.4
2,332,358	-				+1.3
2,332,358	-				+0.4
2,332,358	-				-0.7
2,332,358	-				-0.5
2,332,358	-				-1.6
2,332,358	-				-0.8
2,332,358	-				+1.5
2,332,358	-				-0.7
2,332,358	-				+1.1
2,332,358	-				-2.0
2,332,358	-				+1.1
2,332,358	-				-0.4
2,332,358	-				-0.2
2,332,358	-				-0.0
2,332,358	-				-2.2
2,332,358	-				-0.0
2,332,358	-				+4.1
2,332,358	-				-0.1
2,332,358	-				+0.9
2,332,358	-				-0.1
2,332,358	-				-0.3
2,332,358	-				+1.3
2,332,358	-				+0.7
2,332,432	+				-0.1
2,332,440	-				+1.0
2,332,440	-				-0.5
2,332,440	-				-0.1
2,332,475	+				-0.5
2,332,481	+				+0.3
2,332,481	+				-0.2
2,332,559	+		PGA1_c22480	0.16	-2.4
2,332,562	-		PGA1_c22480	0.16	-0.2
2,332,584	+		PGA1_c22480	0.19	+0.5
2,332,592	-		PGA1_c22480	0.20	-1.4
2,332,666	+		PGA1_c22480	0.30	+0.6
2,332,807	+		PGA1_c22480	0.48	-0.5
2,332,807	+		PGA1_c22480	0.48	+0.7
2,332,807	+		PGA1_c22480	0.48	-0.5
2,332,815	-		PGA1_c22480	0.49	+0.5
2,332,819	+		PGA1_c22480	0.50	-0.9
2,332,827	+		PGA1_c22480	0.51	+0.7
2,332,827	-		PGA1_c22480	0.51	-2.0
2,332,827	-		PGA1_c22480	0.51	+1.5
2,332,827	-		PGA1_c22480	0.51	-0.4
2,333,055	+		PGA1_c22480	0.81	-0.5
2,333,055	+		PGA1_c22480	0.81	-1.2
2,333,063	-		PGA1_c22480	0.82	-0.4
2,333,063	-		PGA1_c22480	0.82	-1.0
2,333,068	-		PGA1_c22480	0.82	-0.3
2,333,211	-				-0.6
2,333,211	-				-0.3
2,333,229	-				+0.1
2,333,229	-				+0.0
2,333,229	-				+1.4
2,333,373	-				-1.0
2,333,481	-		PGA1_c22490	0.12	-0.1
2,333,498	-		PGA1_c22490	0.16	-0.2
2,333,626	+		PGA1_c22490	0.45	+0.9
2,333,647	+		PGA1_c22490	0.50	+0.1
2,333,647	-		PGA1_c22490	0.50	+1.0
2,333,818	-		PGA1_c22490	0.89	-0.9
2,333,855	-				+0.0
2,333,901	-				-1.2
2,333,925	-				-1.0
2,333,940	+				-0.8
2,334,099	+				+0.6
2,334,131	+				+0.2
2,334,165	+				+0.0
2,334,165	+				-0.1
2,334,173	-				+0.4
2,334,173	-				+0.3
2,334,173	-				-0.8