Experiment: m.b. 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01770 and PGA1_c01780 are separated by 12 nucleotides PGA1_c01780 and PGA1_c01790 are separated by 12 nucleotides PGA1_c01790 and PGA1_c01800 are separated by 0 nucleotides PGA1_c01800 and PGA1_c01810 are separated by 208 nucleotides
PGA1_c01770: PGA1_c01770 - 30S ribosomal protein S5, at 163,494 to 164,060
_c01770
PGA1_c01780: PGA1_c01780 - 50S ribosomal protein L30, at 164,073 to 164,261
_c01780
PGA1_c01790: PGA1_c01790 - hypothetical protein, at 164,274 to 164,468
_c01790
PGA1_c01800: PGA1_c01800 - hypothetical protein, at 164,469 to 164,687
_c01800
PGA1_c01810: PGA1_c01810 - putative transcriptional regulator, GntR family, at 164,896 to 166,308
_c01810
Position (kb) 164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 164.341 kb on - strand, within PGA1_c01790 at 164.439 kb on + strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.457 kb on - strand at 164.489 kb on + strand at 164.497 kb on - strand, within PGA1_c01800 at 164.502 kb on - strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.567 kb on + strand, within PGA1_c01800 at 164.608 kb on + strand, within PGA1_c01800 at 164.626 kb on - strand, within PGA1_c01800 at 164.648 kb on + strand, within PGA1_c01800 at 164.671 kb on + strand at 164.671 kb on + strand at 164.761 kb on + strand at 164.785 kb on - strand at 164.798 kb on + strand at 164.806 kb on - strand at 164.853 kb on + strand at 164.859 kb on - strand at 164.889 kb on + strand at 164.899 kb on + strand at 164.902 kb on - strand at 164.907 kb on - strand at 164.918 kb on - strand at 164.948 kb on + strand at 164.958 kb on - strand at 165.015 kb on + strand at 165.055 kb on + strand, within PGA1_c01810 at 165.070 kb on - strand, within PGA1_c01810 at 165.072 kb on + strand, within PGA1_c01810 at 165.124 kb on + strand, within PGA1_c01810 at 165.132 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.189 kb on - strand, within PGA1_c01810 at 165.194 kb on - strand, within PGA1_c01810 at 165.199 kb on - strand, within PGA1_c01810 at 165.221 kb on - strand, within PGA1_c01810 at 165.273 kb on - strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.320 kb on - strand, within PGA1_c01810 at 165.326 kb on + strand, within PGA1_c01810 at 165.344 kb on - strand, within PGA1_c01810 at 165.349 kb on - strand, within PGA1_c01810 at 165.381 kb on + strand, within PGA1_c01810 at 165.381 kb on + strand, within PGA1_c01810 at 165.432 kb on + strand, within PGA1_c01810 at 165.458 kb on - strand, within PGA1_c01810 at 165.458 kb on - strand, within PGA1_c01810 at 165.464 kb on + strand, within PGA1_c01810 at 165.498 kb on + strand, within PGA1_c01810 at 165.498 kb on + strand, within PGA1_c01810 at 165.565 kb on + strand, within PGA1_c01810 at 165.589 kb on - strand, within PGA1_c01810 at 165.622 kb on - strand, within PGA1_c01810 at 165.622 kb on - strand, within PGA1_c01810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 2.5 mM remove 164,341 - PGA1_c01790 0.34 -0.4 164,439 + PGA1_c01790 0.85 +0.9 164,442 - PGA1_c01790 0.86 -0.3 164,442 - PGA1_c01790 0.86 -2.8 164,447 - PGA1_c01790 0.89 +0.3 164,447 - PGA1_c01790 0.89 -0.8 164,457 - -1.8 164,489 + +0.1 164,497 - PGA1_c01800 0.13 -0.8 164,502 - PGA1_c01800 0.15 +0.7 164,504 + PGA1_c01800 0.16 +1.1 164,504 + PGA1_c01800 0.16 -1.4 164,504 + PGA1_c01800 0.16 +0.3 164,504 + PGA1_c01800 0.16 +0.3 164,512 - PGA1_c01800 0.20 -0.2 164,512 - PGA1_c01800 0.20 +0.3 164,512 - PGA1_c01800 0.20 +0.9 164,512 - PGA1_c01800 0.20 -0.2 164,567 + PGA1_c01800 0.45 +0.2 164,608 + PGA1_c01800 0.63 -0.0 164,626 - PGA1_c01800 0.72 -0.6 164,648 + PGA1_c01800 0.82 -1.1 164,671 + -0.2 164,671 + +0.5 164,761 + +1.0 164,785 - +1.1 164,798 + -0.2 164,806 - -0.0 164,853 + -0.8 164,859 - -0.7 164,889 + +1.3 164,899 + +0.3 164,902 - -1.2 164,907 - -0.2 164,918 - +1.3 164,948 + +0.1 164,958 - -0.3 165,015 + -0.9 165,055 + PGA1_c01810 0.11 -0.4 165,070 - PGA1_c01810 0.12 +0.3 165,072 + PGA1_c01810 0.12 -0.9 165,124 + PGA1_c01810 0.16 +0.6 165,132 - PGA1_c01810 0.17 +0.9 165,137 - PGA1_c01810 0.17 +0.3 165,137 - PGA1_c01810 0.17 +0.9 165,189 - PGA1_c01810 0.21 -1.8 165,194 - PGA1_c01810 0.21 +0.3 165,199 - PGA1_c01810 0.21 -0.7 165,221 - PGA1_c01810 0.23 -1.0 165,273 - PGA1_c01810 0.27 -1.3 165,312 + PGA1_c01810 0.29 +1.5 165,312 + PGA1_c01810 0.29 -2.0 165,312 + PGA1_c01810 0.29 -0.4 165,320 - PGA1_c01810 0.30 -1.0 165,326 + PGA1_c01810 0.30 +1.0 165,344 - PGA1_c01810 0.32 +0.5 165,349 - PGA1_c01810 0.32 -0.5 165,381 + PGA1_c01810 0.34 -0.1 165,381 + PGA1_c01810 0.34 -2.7 165,432 + PGA1_c01810 0.38 -1.9 165,458 - PGA1_c01810 0.40 -0.4 165,458 - PGA1_c01810 0.40 +1.3 165,464 + PGA1_c01810 0.40 +0.6 165,498 + PGA1_c01810 0.43 +0.9 165,498 + PGA1_c01810 0.43 +0.5 165,565 + PGA1_c01810 0.47 -0.6 165,589 - PGA1_c01810 0.49 +1.2 165,622 - PGA1_c01810 0.51 -1.4 165,622 - PGA1_c01810 0.51 +1.3
Or see this region's nucleotide sequence