Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07265

Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07260 and AO356_07265 are separated by 10 nucleotidesAO356_07265 and AO356_07270 are separated by 10 nucleotidesAO356_07270 and AO356_07275 overlap by 1 nucleotides AO356_07260: AO356_07260 - peptide ABC transporter permease, at 1,604,084 to 1,605,094 _07260 AO356_07265: AO356_07265 - peptide transporter, at 1,605,105 to 1,606,016 _07265 AO356_07270: AO356_07270 - peptide ABC transporter ATP-binding protein, at 1,606,027 to 1,606,995 _07270 AO356_07275: AO356_07275 - peptide ABC transporter ATP-binding protein, at 1,606,995 to 1,607,975 _07275 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -1 0 1 2 3 4at 1604.260 kb on + strand, within AO356_07260at 1604.260 kb on + strand, within AO356_07260at 1604.261 kb on - strand, within AO356_07260at 1604.270 kb on + strand, within AO356_07260at 1604.270 kb on + strand, within AO356_07260at 1604.270 kb on + strand, within AO356_07260at 1604.270 kb on + strand, within AO356_07260at 1604.270 kb on + strand, within AO356_07260at 1604.271 kb on - strand, within AO356_07260at 1604.271 kb on - strand, within AO356_07260at 1604.271 kb on - strand, within AO356_07260at 1604.271 kb on - strand, within AO356_07260at 1604.279 kb on + strand, within AO356_07260at 1604.280 kb on - strand, within AO356_07260at 1604.288 kb on + strand, within AO356_07260at 1604.288 kb on + strand, within AO356_07260at 1604.288 kb on + strand, within AO356_07260at 1604.289 kb on - strand, within AO356_07260at 1604.289 kb on - strand, within AO356_07260at 1604.289 kb on - strand, within AO356_07260at 1604.289 kb on - strand, within AO356_07260at 1604.346 kb on + strand, within AO356_07260at 1604.601 kb on - strand, within AO356_07260at 1604.780 kb on + strand, within AO356_07260at 1604.780 kb on + strand, within AO356_07260at 1604.780 kb on + strand, within AO356_07260at 1604.780 kb on + strand, within AO356_07260at 1604.780 kb on + strand, within AO356_07260at 1604.781 kb on - strand, within AO356_07260at 1604.781 kb on - strand, within AO356_07260at 1605.057 kb on - strandat 1605.110 kb on + strandat 1605.111 kb on - strandat 1605.119 kb on + strandat 1605.119 kb on + strandat 1605.120 kb on - strandat 1605.120 kb on - strandat 1605.150 kb on + strandat 1605.151 kb on - strandat 1605.633 kb on + strand, within AO356_07265at 1605.633 kb on + strand, within AO356_07265at 1605.634 kb on - strand, within AO356_07265at 1605.634 kb on - strand, within AO356_07265at 1605.681 kb on + strand, within AO356_07265at 1605.681 kb on + strand, within AO356_07265at 1605.682 kb on - strand, within AO356_07265at 1605.888 kb on + strand, within AO356_07265at 1605.889 kb on - strand, within AO356_07265at 1606.037 kb on + strandat 1606.038 kb on - strandat 1606.158 kb on + strand, within AO356_07270at 1606.339 kb on + strand, within AO356_07270at 1606.339 kb on + strand, within AO356_07270at 1606.339 kb on + strand, within AO356_07270at 1606.706 kb on - strand, within AO356_07270at 1606.768 kb on + strand, within AO356_07270at 1606.897 kb on + strand, within AO356_07270at 1607.005 kb on + strandat 1607.005 kb on + strandat 1607.006 kb on - strandat 1607.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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1,604,260 + AO356_07260 0.17 +3.2
1,604,260 + AO356_07260 0.17 +4.2
1,604,261 - AO356_07260 0.18 +3.1
1,604,270 + AO356_07260 0.18 +4.6
1,604,270 + AO356_07260 0.18 +3.7
1,604,270 + AO356_07260 0.18 +4.1
1,604,270 + AO356_07260 0.18 +3.4
1,604,270 + AO356_07260 0.18 +2.9
1,604,271 - AO356_07260 0.18 +3.3
1,604,271 - AO356_07260 0.18 +4.1
1,604,271 - AO356_07260 0.18 +3.7
1,604,271 - AO356_07260 0.18 +4.3
1,604,279 + AO356_07260 0.19 +3.3
1,604,280 - AO356_07260 0.19 +4.3
1,604,288 + AO356_07260 0.20 +4.1
1,604,288 + AO356_07260 0.20 +3.0
1,604,288 + AO356_07260 0.20 +2.7
1,604,289 - AO356_07260 0.20 +3.6
1,604,289 - AO356_07260 0.20 +3.9
1,604,289 - AO356_07260 0.20 +3.9
1,604,289 - AO356_07260 0.20 +3.3
1,604,346 + AO356_07260 0.26 +3.8
1,604,601 - AO356_07260 0.51 +3.3
1,604,780 + AO356_07260 0.69 +4.3
1,604,780 + AO356_07260 0.69 +4.1
1,604,780 + AO356_07260 0.69 +3.2
1,604,780 + AO356_07260 0.69 +3.5
1,604,780 + AO356_07260 0.69 +4.3
1,604,781 - AO356_07260 0.69 +4.0
1,604,781 - AO356_07260 0.69 +3.6
1,605,057 - +3.6
1,605,110 + +1.7
1,605,111 - +3.5
1,605,119 + +3.9
1,605,119 + +3.2
1,605,120 - +3.5
1,605,120 - +3.2
1,605,150 + +1.3
1,605,151 - +4.0
1,605,633 + AO356_07265 0.58 +3.8
1,605,633 + AO356_07265 0.58 +3.2
1,605,634 - AO356_07265 0.58 +3.9
1,605,634 - AO356_07265 0.58 +3.2
1,605,681 + AO356_07265 0.63 +4.0
1,605,681 + AO356_07265 0.63 +4.4
1,605,682 - AO356_07265 0.63 +4.0
1,605,888 + AO356_07265 0.86 +3.0
1,605,889 - AO356_07265 0.86 +3.6
1,606,037 + +4.1
1,606,038 - +3.5
1,606,158 + AO356_07270 0.14 +4.6
1,606,339 + AO356_07270 0.32 +3.8
1,606,339 + AO356_07270 0.32 +4.5
1,606,339 + AO356_07270 0.32 +3.4
1,606,706 - AO356_07270 0.70 +4.0
1,606,768 + AO356_07270 0.76 +3.3
1,606,897 + AO356_07270 0.90 +3.4
1,607,005 + +3.9
1,607,005 + +2.0
1,607,006 - +2.0
1,607,009 + +3.9

Or see this region's nucleotide sequence