Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07015

Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07010 and AO356_07015 are separated by 0 nucleotidesAO356_07015 and AO356_07020 are separated by 7 nucleotidesAO356_07020 and AO356_07025 overlap by 14 nucleotides AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686 _07010 AO356_07015: AO356_07015 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,549,687 to 1,550,211 _07015 AO356_07020: AO356_07020 - LPS export ABC transporter periplasmic protein LptC, at 1,550,219 to 1,550,788 _07020 AO356_07025: AO356_07025 - lipopolysaccharide transport periplasmic protein LptA, at 1,550,775 to 1,551,320 _07025 Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -1 0 1 2at 1548.697 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1548.699 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1549.684 kb on + strandat 1550.218 kb on + strandat 1550.218 kb on + strandat 1550.218 kb on + strandat 1550.654 kb on + strand, within AO356_07020at 1550.700 kb on + strand, within AO356_07020at 1550.763 kb on + strandat 1550.763 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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1,548,697 + +0.0
1,548,699 + +0.2
1,548,699 + -0.7
1,548,699 + -0.7
1,548,699 + -0.4
1,549,684 + +0.5
1,549,684 + +0.6
1,549,684 + -0.5
1,549,684 + +0.2
1,549,684 + +0.4
1,550,218 + +0.2
1,550,218 + -0.1
1,550,218 + +1.8
1,550,654 + AO356_07020 0.76 +0.6
1,550,700 + AO356_07020 0.84 +0.0
1,550,763 + -0.2
1,550,763 + +0.3

Or see this region's nucleotide sequence