Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03795 and AO356_03800 are separated by 88 nucleotides AO356_03800 and AO356_03805 are separated by 31 nucleotides
AO356_03795: AO356_03795 - flagellar hook-length control protein, at 840,711 to 842,084
_03795
AO356_03800: AO356_03800 - histidine kinase, at 842,173 to 842,517
_03800
AO356_03805: AO356_03805 - chemotaxis protein CheY, at 842,549 to 844,255
_03805
Position (kb) 842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 841.988 kb on + strand at 842.085 kb on - strand at 842.112 kb on + strand at 842.112 kb on + strand at 842.112 kb on + strand at 842.112 kb on + strand at 842.113 kb on - strand at 842.113 kb on - strand at 842.113 kb on - strand at 842.113 kb on - strand at 842.116 kb on + strand at 842.116 kb on + strand at 842.116 kb on + strand at 842.117 kb on - strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.437 kb on - strand, within AO356_03800 at 842.437 kb on - strand, within AO356_03800 at 842.550 kb on + strand at 842.551 kb on - strand at 842.588 kb on - strand at 842.781 kb on + strand, within AO356_03805 at 842.782 kb on - strand, within AO356_03805 at 842.809 kb on + strand, within AO356_03805 at 842.809 kb on + strand, within AO356_03805 at 842.810 kb on - strand, within AO356_03805 at 842.810 kb on - strand, within AO356_03805 at 842.823 kb on + strand, within AO356_03805 at 842.823 kb on + strand, within AO356_03805 at 842.823 kb on + strand, within AO356_03805 at 842.823 kb on + strand, within AO356_03805 at 842.824 kb on - strand, within AO356_03805 at 842.824 kb on - strand, within AO356_03805 at 842.824 kb on - strand, within AO356_03805 at 842.824 kb on - strand, within AO356_03805 at 842.901 kb on + strand, within AO356_03805 at 842.901 kb on + strand, within AO356_03805 at 842.901 kb on + strand, within AO356_03805 at 842.901 kb on + strand, within AO356_03805 at 842.920 kb on + strand, within AO356_03805 at 842.920 kb on + strand, within AO356_03805 at 842.921 kb on - strand, within AO356_03805 at 842.922 kb on + strand, within AO356_03805 at 842.922 kb on + strand, within AO356_03805 at 842.923 kb on - strand, within AO356_03805 at 842.923 kb on - strand, within AO356_03805 at 842.980 kb on - strand, within AO356_03805 at 843.070 kb on - strand, within AO356_03805 at 843.070 kb on - strand, within AO356_03805 at 843.269 kb on + strand, within AO356_03805 at 843.269 kb on + strand, within AO356_03805 at 843.269 kb on + strand, within AO356_03805 at 843.270 kb on - strand, within AO356_03805 at 843.270 kb on - strand, within AO356_03805 at 843.272 kb on + strand, within AO356_03805 at 843.273 kb on - strand, within AO356_03805 at 843.273 kb on - strand, within AO356_03805 at 843.273 kb on - strand, within AO356_03805 at 843.392 kb on - strand, within AO356_03805 at 843.392 kb on - strand, within AO356_03805 at 843.392 kb on - strand, within AO356_03805 at 843.421 kb on - strand, within AO356_03805
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 841,988 + +1.7 842,085 - -0.1 842,112 + +0.5 842,112 + -1.0 842,112 + -0.9 842,112 + -1.6 842,113 - +0.3 842,113 - -0.2 842,113 - +0.8 842,113 - +0.9 842,116 + -0.2 842,116 + -0.2 842,116 + +0.6 842,117 - +0.6 842,128 + -0.0 842,128 + +0.9 842,129 - -1.6 842,129 - -0.5 842,437 - AO356_03800 0.77 -1.4 842,437 - AO356_03800 0.77 -2.2 842,550 + -2.6 842,551 - +1.0 842,588 - +0.0 842,781 + AO356_03805 0.14 -1.6 842,782 - AO356_03805 0.14 +0.1 842,809 + AO356_03805 0.15 -2.2 842,809 + AO356_03805 0.15 -2.0 842,810 - AO356_03805 0.15 -0.9 842,810 - AO356_03805 0.15 +0.8 842,823 + AO356_03805 0.16 -0.2 842,823 + AO356_03805 0.16 -3.4 842,823 + AO356_03805 0.16 -3.5 842,823 + AO356_03805 0.16 -2.6 842,824 - AO356_03805 0.16 -0.2 842,824 - AO356_03805 0.16 -0.2 842,824 - AO356_03805 0.16 -0.2 842,824 - AO356_03805 0.16 -0.2 842,901 + AO356_03805 0.21 -2.1 842,901 + AO356_03805 0.21 -2.1 842,901 + AO356_03805 0.21 -1.0 842,901 + AO356_03805 0.21 -2.2 842,920 + AO356_03805 0.22 -1.2 842,920 + AO356_03805 0.22 -1.5 842,921 - AO356_03805 0.22 -0.4 842,922 + AO356_03805 0.22 -1.1 842,922 + AO356_03805 0.22 -1.4 842,923 - AO356_03805 0.22 -1.6 842,923 - AO356_03805 0.22 -0.8 842,980 - AO356_03805 0.25 -0.7 843,070 - AO356_03805 0.31 +0.4 843,070 - AO356_03805 0.31 +0.2 843,269 + AO356_03805 0.42 -0.8 843,269 + AO356_03805 0.42 -1.8 843,269 + AO356_03805 0.42 -0.8 843,270 - AO356_03805 0.42 +0.1 843,270 - AO356_03805 0.42 -0.9 843,272 + AO356_03805 0.42 -2.0 843,273 - AO356_03805 0.42 -1.2 843,273 - AO356_03805 0.42 -0.6 843,273 - AO356_03805 0.42 -1.5 843,392 - AO356_03805 0.49 -1.2 843,392 - AO356_03805 0.49 -0.8 843,392 - AO356_03805 0.49 -3.7 843,421 - AO356_03805 0.51 -1.0
Or see this region's nucleotide sequence